Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00627 ATGGAGCTGTGCAAGATGGATAGTCAGGTGAAGCTTGCAGTCGTGGTGAAGGTGATGGGGAGGACTGGATCAAGAGGACAGGTGACCCAGGTGAGGGTCAAGTTTCTGGATGACCAAAACCGTCTCATCATGAGGAATGTGAAGGGACCTGTGAGGGAGGGAGATATCCTCACCCTGCTAGAGTCTGAAAGGGAAGCACGGAGGTTGCGTTGA 213 0.5305 MELCKMDSQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESEREARRLR* 71
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00627 70 PANTHER 40S RIBOSOMAL PROTEIN S28 6 70 IPR000289 GO:0003735|GO:0005840|GO:0006412
Eupl01g00627 70 CDD S1_S28E 11 70 IPR000289 GO:0003735|GO:0005840|GO:0006412
Eupl01g00627 70 Hamap 30S ribosomal protein S28e [rps28e]. 6 70 IPR000289 GO:0003735|GO:0005840|GO:0006412
Eupl01g00627 70 ProSitePatterns Ribosomal protein S28e signature. 61 69 IPR028626 -
Eupl01g00627 70 FunFam 40S ribosomal protein S28 2 70 - -
Eupl01g00627 70 SUPERFAMILY Nucleic acid-binding proteins 6 70 IPR012340 -
Eupl01g00627 70 Gene3D - 4 70 IPR012340 -
Eupl01g00627 70 Pfam Ribosomal protein S28e 9 69 IPR000289 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00627 Eupl-Chr1 23232717 23235700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00627 6 70 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 89.231 8.84e-35 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00627 K02979 - taes:123083827 103.605