Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00620 ATGAGGGGTAGAAGTTACAGTTACAGTCCTTCACCACCAAAGGGGTATGGAAGAAGAGGTCGGAGCCCTAGCCCTAGGGGTCGCTATGGAGGTCCTAGTAGAGATCTTCCTACCAGTCTTCTAGTTCGCAACCTTCGCCATGACTGTAGGCCAGAAGACCTCCGTAGGCCGTTTGGGCAATTTGGCCCTCTTAAGGACATTTACTTGCCACGAGATTACCATACTGGGCAGCCACGCGGCTTTGGTTTTGTCCAATATGTAGAACCTGCTGACGCTACAGACGCCAAATATCAAATGGATGGGCAAATTCTTCATGGCCGTGAGCTGACTGTTGTATTTGCAGAGGAGAATAGAAAGAAGCCATCTGACATGAGGGCAAGAGAACGTGTGAGGGGTCGATCATATGACCGCAGGCGGTCTCCCCCTCGCCATTCTCGCTCCCCGCACTATGCAAGATCTCGGTCTCGAAGCCCGGGTCACTATTCTCCTTCCCCTGTGCAAAGACGTTACTCGAGGTCGGTTTCACCTCAAGAAAGAAGGGACCATCGAGAGCAATCATACTCCCACTCTCCTCCCCCATATAATGGCTCAAGGAGTCGAAGCAGGAGCCGAACCCCAGTAGATTACTCAAGGGGAGAACACAGAGAGAGGTCCTTGTCTCTGAGCCAGTAA 672 0.5208 MRGRSYSYSPSPPKGYGRRGRSPSPRGRYGGPSRDLPTSLLVRNLRHDCRPEDLRRPFGQFGPLKDIYLPRDYHTGQPRGFGFVQYVEPADATDAKYQMDGQILHGRELTVVFAEENRKKPSDMRARERVRGRSYDRRRSPPRHSRSPHYARSRSRSPGHYSPSPVQRRYSRSVSPQERRDHREQSYSHSPPPYNGSRSRSRSRTPVDYSRGEHRERSLSLSQ* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00620 223 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 37 209 - -
Eupl01g00620 223 MobiDBLite consensus disorder prediction 115 223 - -
Eupl01g00620 223 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Eupl01g00620 223 MobiDBLite consensus disorder prediction 188 203 - -
Eupl01g00620 223 MobiDBLite consensus disorder prediction 173 187 - -
Eupl01g00620 223 MobiDBLite consensus disorder prediction 115 135 - -
Eupl01g00620 223 Gene3D - 32 217 IPR012677 -
Eupl01g00620 223 MobiDBLite consensus disorder prediction 204 223 - -
Eupl01g00620 223 MobiDBLite consensus disorder prediction 1 38 - -
Eupl01g00620 223 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Eupl01g00620 223 MobiDBLite consensus disorder prediction 136 153 - -
Eupl01g00620 223 SMART rrm1_1 39 112 IPR000504 GO:0003723
Eupl01g00620 223 MobiDBLite consensus disorder prediction 157 172 - -
Eupl01g00620 223 SUPERFAMILY RNA-binding domain, RBD 38 143 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00620 Eupl-Chr1 22962471 22972980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00620 38 163 Eukaryotic Initiation Factors Gene Family AT2G36660 30.469 9.56e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00620 K12900 - vvi:100259677 277.33