Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00608 ATGCGAACTTCGTGGGCGGATTCTGTCGCGAACTCTGCAGTTGAGAATGATGTAGTTGATAATGGTGGCGCTTCGCGTCCCCCTCGATCTACTTACGTTCCCCCACATCTTCGTAACCGACCACCTTCATCCGATCCTCCTGCTCCGGCCACCACTGCTCCTGGCCCTTCATCTGCTGGGAACCGTTGGGGTGGTCCTAGGACTGATTTAGGCCGTCCTGGCTTTAGTGGTGGATGGAACAACCGAAGTGGTGGATTGGATCGCAGAAGAGAGCGGGAGGTAAACCCTTTTGAAGGAGATGATGATGTTGATGCAGAAAGCGCTTTCACCGAGCAGGAGAATACTGGCATTAACTTCGATGCCTACGAAGATATTCCAGTAGAGACAAGCGGGGATAATGTGCCTCCTCCTGTGAATACTTTTGCGGAAATTGATTTAGGGGAAGCACTGAATGAGAATATACGGAGGTGTAAGTATGTCAAGCCGACACCTGTGCAGCGTAATGCCATCCCAATTTCTCTTGCTGGACGGGACTTGATGGCGTGCGCTCAAACGGGATCTGGCAAGACAGCTGCTTTTTGTTTCCCAATTATCAGTGGTATTATGAATGGGCAGTTTTCGCAGAGACCACGCAGTAATCGGACAGCGTATCCACTTGCTCTTATTCTCTCTCCTACAAGAGAGCTCTCGTGCCAGATACATGAGGAGGCTAGAAAATTTTCCTATCAAACTGGTGTCAGGGCGGTCGTTGCTTACGGAGGAGCACCAATTAATCAACAGCTGCGGGACCTGGAGAGAGGTGTTGATATTCTTGTGGCAACTCCAGGACGGTTGGTGGATTTGCTGGAGAGGAGTAGAGTTTCATTACAGATGATCCAGTATTTGGCTCTAGATGAGGCAGATCGTATGTTGGATATGGGTTTTGAGCCACAAATTAGAAAGATTGTTGAAACTATGGATATGCCTCAGCCAGGTGCAAGGCAGACGATGCTGTTCAGTGCCACCTTTCCAAAAGAGATACAGAGACTGGCCTCTGACTTTCTTTCGAATTACATATTTCTGGCTGTTGGGAGGGTTGGTTCAAGTACTGATTTGATTGTCCAAAGAGTTGAATTTGTTCTTGAGTCAGATAAGAGAAGCCACCTCATGGACCTGCTTCATGCCCAGAGGGCAAATGGAACTCATGGAAAGCAAGCTCTGACTTTAGTTTTTGTTGAGACAAAGAAAGGAGCTGATTCGTTGGAACACTGGTTGTGTATAAATGGTTTTCCTGCAACTACTATTCATGGTGATAGAACACAGCAGGAAAGGGAACTAGCTTTGAGATCGTTCAAGAGTGGAAAAACCCCAATTTTGGTGGCAACAGATGTGGCAGCACGTGGCCTTGATATCCCCCATGTCGCACATGTGGTAAACTTTGACCTCCCCAATGACATTGATGACTACGTCCACCGGATAGGGAGGACAGGGCGAGCGGGTAAGTCGGGCTTGGCGACTGCTTTCTTCAACGAAGGCAACTCTTCAATGGCAAGAGCACTATCTGATCTGATGCAAGAGTCCAACCAAGAGGTACCTGCTTGGCTCGCCCGTTATGCTGCCCGGTCTACTTTTGGAGGTGGGGGGAGGAACCGCCGTTCTGGCGGAGGCCGCTTTGGTGTTCGTGACTACCGGAGGGATGCTTCTTTCAATAGGGGTGGGGGTGGTGCAGACTACTATGGTGGAGGCAACAGTAGCAGTGGATATGCGGCCTCCCCCGGTGGTTATGGGGGTGGATCTGGTCCAGGCGTGACAAGTGCGTGGGATTAG 1806 0.4989 MRTSWADSVANSAVENDVVDNGGASRPPRSTYVPPHLRNRPPSSDPPAPATTAPGPSSAGNRWGGPRTDLGRPGFSGGWNNRSGGLDRRREREVNPFEGDDDVDAESAFTEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNENIRRCKYVKPTPVQRNAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMNGQFSQRPRSNRTAYPLALILSPTRELSCQIHEEARKFSYQTGVRAVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERSRVSLQMIQYLALDEADRMLDMGFEPQIRKIVETMDMPQPGARQTMLFSATFPKEIQRLASDFLSNYIFLAVGRVGSSTDLIVQRVEFVLESDKRSHLMDLLHAQRANGTHGKQALTLVFVETKKGADSLEHWLCINGFPATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNSSMARALSDLMQESNQEVPAWLARYAARSTFGGGGRNRRSGGGRFGVRDYRRDASFNRGGGGADYYGGGNSSSGYAASPGGYGGGSGPGVTSAWD* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00608 601 CDD SF2_C_DEAD 366 502 - -
Eupl01g00608 601 MobiDBLite consensus disorder prediction 1 15 - -
Eupl01g00608 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 219 512 IPR027417 -
Eupl01g00608 601 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 109 532 - -
Eupl01g00608 601 FunFam Probable ATP-dependent RNA helicase DDX4 102 356 - -
Eupl01g00608 601 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 139 167 IPR014014 GO:0003724
Eupl01g00608 601 FunFam ATP-dependent RNA helicase RhlB 357 536 - -
Eupl01g00608 601 Gene3D - 95 356 IPR027417 -
Eupl01g00608 601 SMART helicmild6 412 493 IPR001650 -
Eupl01g00608 601 MobiDBLite consensus disorder prediction 582 601 - -
Eupl01g00608 601 CDD DEADc_DDX3_DDX4 140 360 IPR044763 GO:0003724|GO:0005524
Eupl01g00608 601 MobiDBLite consensus disorder prediction 39 53 - -
Eupl01g00608 601 SMART ultradead3 158 369 IPR014001 -
Eupl01g00608 601 Gene3D - 357 536 IPR027417 -
Eupl01g00608 601 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 365 532 IPR001650 -
Eupl01g00608 601 Pfam Helicase conserved C-terminal domain 378 493 IPR001650 -
Eupl01g00608 601 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 170 354 IPR014001 -
Eupl01g00608 601 Pfam DEAD/DEAH box helicase 163 343 IPR011545 GO:0003676|GO:0005524
Eupl01g00608 601 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00608 Eupl-Chr1 22802418 22822290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00608 137 529 Eukaryotic Initiation Factors Gene Family AT3G19760 31.552 1.78e-60 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00608 K11594 - ming:122061776 943.725