Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00603 ATGGGGAGGGTAAAGGTTAGGATCAGGAAGTTGGAGACAGCGTTTGCGAGGAAGAACACTTTCTCAAAACGTAAGCCTGCAATCATGAGGAAGGTGGATGAATTGTCCATTCTGTGTGACATCGATGTCCTTCTCCTCATGTTCTCTCCTGCTGGCAAGCCGATCCTCAGTCTTGGGGAAAATAGCGAGTTAAGCACGATCCTAGCCAAGTATGCACTGTTAGATCCCCAAGAAAGAGCCAAAAGGAAGTGCGATTCTTTGGAACTTCTGAAAAGAATGTGTGAAAAGATAAACCATGAAATTGATATCGAGGCTTACAATGGGAGAAAACAAAAACTTGAGGCATTGCGTAGTCAGCTAGTGACACTGCAGTCACAGATCACTGATGCACACTACCGATTGAGCTATTGGACCACTCCGGAAAAAGTCAATAACCTGGTCCAGATCAGGGAAATGGAAGAATCCCTTGTTAAGTCTCTTGGTCAGCTTAGAGAGCGCAAGGAACAGTTCTCTCACTTACCTGATCACCGCATTGCACCTAGACCAAATAGAGATGCTGAGAGGCTCATGAATCCTCGCATATTAAATCCAAACATAGTACCAGGGGTGGAACTAGACTTCCAGTATCAGTGTCAACGCCGGGGCCTAGAGAATCTATATCATGGTGTCGATCGTTATACAAATGCTTCGCGCATTAATCCTGTACAACATGAGATTGTTCAGGTGAAATTTCAAGGCTCTCTGTCCTTCCCTATTGAGAAGCACCCATACTGA 774 0.4509 MGRVKVRIRKLETAFARKNTFSKRKPAIMRKVDELSILCDIDVLLLMFSPAGKPILSLGENSELSTILAKYALLDPQERAKRKCDSLELLKRMCEKINHEIDIEAYNGRKQKLEALRSQLVTLQSQITDAHYRLSYWTTPEKVNNLVQIREMEESLVKSLGQLRERKEQFSHLPDHRIAPRPNRDAERLMNPRILNPNIVPGVELDFQYQCQRRGLENLYHGVDRYTNASRINPVQHEIVQVKFQGSLSFPIEKHPY* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00603 257 Gene3D - 15 96 IPR036879 GO:0003677|GO:0046983
Eupl01g00603 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl01g00603 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Eupl01g00603 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl01g00603 257 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Eupl01g00603 257 CDD MADS 2 54 - -
Eupl01g00603 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 15 54 IPR002100 GO:0003677|GO:0046983
Eupl01g00603 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Eupl01g00603 257 SUPERFAMILY SRF-like 1 83 IPR036879 GO:0003677|GO:0046983
Eupl01g00603 257 Coils Coil 106 126 - -
Eupl01g00603 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00603 Eupl-Chr1 22748176 22755707 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00603 1 171 Type I MADS-box Gene Family AT2G03060 47.093 8.08e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl01g00603 SRF-TF 5.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00603 - - nnu:104598102 182.956