Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00591 ATGCACCACCTGTATCCGCGTTCCCGAAGGCACCCCTCTCTTTCAAGAGGATTCGCGACATGTCAAGCCCTGCTTGGTAGTTTCCACCGCCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGGACTTGAAAAGCCACCTACAAACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTACCGCGGCTGCTGGCACAGAATACCGTCATTGCTTCTTCTCCGGGAAAAGAAGTTCACGACCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGCAAAGGGTCGAGAAACTCAACGCCACTATTCCACTATTCCTCAACAACTTGGAGCCGGGCCTTCTTTTCGCACTATTACGGATACGAAAATAATGGGAAAAATTGGATTCAATTGTCAACTGCTCCTATCGGAAATAGGATTGACTACGGATTCGAGCCATAGCACATGGTTTCATAAAATCCAGAAAAAATGTAGGACTGGTGCCAACAGTTCATCACGGAAGAAAGGACTCACCGAGCCGGGATCACTAACTAATACTAATATAATAGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGGTTCCGTTGCTACCGCGGGCCTTACGCAATCGATCGGATCATATAGATATCCCTTCAACACAACATAGTTACTCTTCGGGACGGAGTGGAAGAAGGGCGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAATAGTTGAACGAGGAGCCAGTGACAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGATTAACCTCTGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTCACAAGAACATTCTGTAGTCTTAGTAAGAGGAGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAAGATCGTCAACAAGGGCGTTCTAGTACTGCAGAAGAAAAAACTGCAAAATCCGATCCAATTTATCGTAATCGATTAGTTAACATGTTGGTTAACCGTATTCTGAAACACGGAAAAAAATCATTGGCTTATCAAATTATCTATCGAGCCCTGAAAAAGATTCAACAAAAGACAGAAACAAATCCACTATCTGTTTTACGTCAAGCAATACGTGGAGTAACTCCCGATATAGCAGTAAAAGCAAGACGTGTAGGCGGATCGACTCATCAAGTTCCCATTGAAATAGGATCTACACAAGGAAAAGCACTTGCCATTCGTTGGTTATTAGGGGCATCCCGAAAACGTCCGGGATCTGTTCAAGCTTACAAGAACTACACAGTTGGAGACTCCTTGGGTTGGTATGACAATCTTCAAAAGCCCAACATAAATTACCAAAAATGGGTTGTTGCCAAGAACTTCAGCTTGGGAGATTTCCTCATTTTCAACACCGATAACAACCATTCGGTTGTCCAAACGTACAATTTCACTACTTACAAACGGTGCGATTACGACGATGCTGAAGAAGACGACACCATTCAATGGTCATCTGTAGATCCATCTGCAACTACACCACATCCAGTCTCGGTACCGGTTCCTCTAGTAAAAGAAGGAATGATATATTTCTTTTCGGGCGATTATGACGGCGAGCAATGCAAACACGGGCAACACTTCAAGATAAATGTAACACATGGAAAAGGGTTGCCAGAAAGTCTCGCAAACCCATCAACGGAATCACCGGCTCCGACAAGTCCGGACGACGATTCAACACCAGATCCAGATACTGTAATTCCTTCGAATTTTAATAATCCCCAAGAGAGTGATGATGTTAAAGCGACATCAGGGTCTGTTTCCTTATCAATGTTTGTGAGGTTCTTGGACATGAAATTGAATGGGGTTCTGGTGTTGTCAGGGCTTGTTTGGTTTTTTTGCTGA 2079 0.4536 MHHLYPRSRRHPSLSRGFATCQALLGSFHRLSRVEPWDLTADLKSHLQTLYAQSFRITLASSVLPRLLAQNTVIASSPGKEVHDPWAFYLHAALLRQAFAHCGKFPTAASRRSLGRVSVPVWLIILSDQLLIIALAKGRETQRHYSTIPQQLGAGPSFRTITDTKIMGKIGFNCQLLLSEIGLTTDSSHSTWFHKIQKKCRTGANSSSRKKGLTEPGSLTNTNIIEKNCLFCILSPVPLLPRALRNRSDHIDIPSTQHSYSSGRSGRRAEILERGKGSNDFEIVERGASDSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSTAEEKTAKSDPIYRNRLVNMLVNRILKHGKKSLAYQIIYRALKKIQQKTETNPLSVLRQAIRGVTPDIAVKARRVGGSTHQVPIEIGSTQGKALAIRWLLGASRKRPGSVQAYKNYTVGDSLGWYDNLQKPNINYQKWVVAKNFSLGDFLIFNTDNNHSVVQTYNFTTYKRCDYDDAEEDDTIQWSSVDPSATTPHPVSVPVPLVKEGMIYFFSGDYDGEQCKHGQHFKINVTHGKGLPESLANPSTESPAPTSPDDDSTPDPDTVIPSNFNNPQESDDVKATSGSVSLSMFVRFLDMKLNGVLVLSGLVWFFC* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00591 692 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 210 385 IPR006032 GO:0003735|GO:0005840|GO:0006412
Eupl01g00591 692 SUPERFAMILY Cupredoxins 492 610 IPR008972 -
Eupl01g00591 692 Gene3D - 494 615 IPR008972 -
Eupl01g00591 692 ProSiteProfiles Phytocyanin domain profile. 492 612 IPR003245 GO:0009055
Eupl01g00591 692 Pfam Ribosomal protein S12/S23 288 380 IPR006032 GO:0003735|GO:0005840|GO:0006412
Eupl01g00591 692 NCBIfam 30S ribosomal protein S12 294 381 IPR005679 GO:0003735|GO:0006412|GO:0015935
Eupl01g00591 692 Gene3D - 261 386 IPR012340 -
Eupl01g00591 692 MobiDBLite consensus disorder prediction 617 659 - -
Eupl01g00591 692 Pfam Ribosomal protein S7p/S5e 375 486 IPR023798 -
Eupl01g00591 692 CDD Ribosomal_S12 301 372 IPR005679 GO:0003735|GO:0006412|GO:0015935
Eupl01g00591 692 CDD Phytocyanin 492 610 - -
Eupl01g00591 692 ProSitePatterns Ribosomal protein S7 signature. 393 419 IPR020606 GO:0003723|GO:0003735|GO:0006412
Eupl01g00591 692 FunFam Early nodulin-like protein 18 491 613 - -
Eupl01g00591 692 Gene3D Ribosomal protein S7 domain 387 493 IPR036823 -
Eupl01g00591 692 SUPERFAMILY Ribosomal protein S7 378 485 IPR036823 -
Eupl01g00591 692 MobiDBLite consensus disorder prediction 618 659 - -
Eupl01g00591 692 Pfam Plastocyanin-like domain 507 604 IPR003245 GO:0009055
Eupl01g00591 692 ProSitePatterns Ribosomal protein S12 signature. 305 312 IPR006032 GO:0003735|GO:0005840|GO:0006412
Eupl01g00591 692 SUPERFAMILY Nucleic acid-binding proteins 297 381 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00591 Eupl-Chr1 22563329 22575380 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00591 487 659 Phytocyanin Superfamily AT1G08500 60.674 1.33e-74 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00591 - - tss:122644118 293.123