Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00590 ATGGCGAAGCGCTTGATTCCTTCTCTGAATCGCGTGTTGGTGGAGAAAATCGTTCCTCCGTCCAAAACCAATGCTGGAATATTACTCCCTGAGAAGACCAACAAGCTGAACTCTGGAAAAGTTGTTGCGGTGGGTCCTGGAGCTCGTGACAGAGATGGAAAACTTATTCCTGTTAGTGTGAAGGAGGGAGACACTGTCCTTTTACCTGAATATGGAGGGACTGATGTAAAGCTTGGTGAAAAAGAAAATATTGTTCGTGGGGTTATTGGGAGACAGACGTGCTCTGGCAGTGACCTAGGTATCATCTTTATAGAGATGACGACATATTGGGAACACTGCATGAGTGATATATCCACCAACCCTTACCAGGGTAAAAAGCTTGAGAAGGATCTTCTCGTCTTTGAGGCAATTTTAGCATGTAGAAGAGTTGCGCTGTCGGGTTGCAGCTAA 450 0.4556 MAKRLIPSLNRVLVEKIVPPSKTNAGILLPEKTNKLNSGKVVAVGPGARDRDGKLIPVSVKEGDTVLLPEYGGTDVKLGEKENIVRGVIGRQTCSGSDLGIIFIEMTTYWEHCMSDISTNPYQGKKLEKDLLVFEAILACRRVALSGCS* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00590 149 Pfam Chaperonin 10 Kd subunit 6 82 IPR020818 GO:0005524|GO:0006457|GO:0044183
Eupl01g00590 149 SUPERFAMILY GroES-like 4 85 IPR011032 -
Eupl01g00590 149 CDD cpn10 4 82 IPR020818 GO:0005524|GO:0006457|GO:0044183
Eupl01g00590 149 Gene3D GroES chaperonin 1 88 IPR037124 GO:0006457
Eupl01g00590 149 SMART Cpn10_2 4 89 IPR020818 GO:0005524|GO:0006457|GO:0044183
Eupl01g00590 149 FunFam 10 kDa chaperonin, mitochondrial 1 87 - -
Eupl01g00590 149 PRINTS 10kDa chaperonin signature 61 73 IPR020818 GO:0005524|GO:0006457|GO:0044183
Eupl01g00590 149 PRINTS 10kDa chaperonin signature 5 20 IPR020818 GO:0005524|GO:0006457|GO:0044183
Eupl01g00590 149 PRINTS 10kDa chaperonin signature 26 47 IPR020818 GO:0005524|GO:0006457|GO:0044183
Eupl01g00590 149 PANTHER 10 KDA HEAT SHOCK PROTEIN 1 85 IPR020818 GO:0005524|GO:0006457|GO:0044183
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00590 Eupl-Chr1 22549854 22556290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00590 3 85 Calmodulin-binding Proteins AT5G20720 40.476 8.37e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00590 K04078 - msin:131251005 157.147