LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl01g00580	ATGGGACTCTGTAATGGAAAACACATCCACAAACCTCAAACCAAACCACAAAACCCAATAATTCCCGGTGATGTTGAACCCACGGTGAACTCCGAAACCAGCAAAGCTTCAAACTTCCCCTTCTATAGCCCCAGTCCACTGCCAAGTGCCTTCAAGAACTCGCCCCATCACTCGAGCGTGAGTTCGACCCCTTTACGCATCTTCAAGCGCCCGTTTCCCCCTCCTTCGCCTGCTAAGCACATCAAGGCATTCCTTGCACGCAGGCATGGCTTGGTGAAGCCGAACGAAGCTTCAATTCCCGAAGGAAACGAGTGTGAAGTGGGGTTGGATAAGGATTTTGGGTTCTCGAAGCAGTTCGTCTCCAAGTATGAGCTCGGAGAAGAGGTGGGTCGTGGGCATTTTGGGTATACTTCTTCTGCAAAGGTGAAGAAAGGGGAATTAAAGGGGCAGGAAGTTGCAGTCAAGGTTATTTCGAAATCAAAGATGACCACAGCCATTGCTATCGAGGATGTACAAAGAGAAGTGAAAATGTTGCGTGCTCTAACTGGACATAAGAACCTAGTGCAGTGCTACGATGCCTATGAAGATGACGACAATGTGTATATAGTGATGGAATTATGCAAAGGAGGTGAACTTTTAGATAGGATACTCTCAAGGGGTGGAAAATATTTAGAAGAAGATGCCAAGCCTGTTATGGTCCAGATTCTAAGTGTTGTCGCCTACTGTCATCTCCAAGGCGTGGTTCACCGTGACCTCAAGCCAGAGAATTTTCTTTTTAGTTCGAAGGAGGAGGAATCTCCACTGAAGGCCATTGATTTTGGATTGTCTGATTTCGTAAAGCCAGATGAAAGGCTGAATGATATTGTAGGAAGCGCATATTATGTTGCTCCTGAAGTTCTACATAGATCATATGGCACCGAGGCAGACATGTGGAGTGTCGGTGTGATTGCATATATTCTTCTTTGTGGAAGTCGTCCTTTTTGGGCCCGGACGGAATCGGGCATCTTCCGAGCTGTTCTGAAAGCAGAACTCAGCTTCGACGAAGCCCCTTGGCCTTCTTTGTCTTCCGATGCAAGAGATTTTGTCAAGAGATTGTTGAGCAAGGATTACCGTAAGAGATTGACTGCTGCTCAGGCTCTCAGTCATCCATGGTTGTCCAGTTATCAAGATGTCAAGATCCCTTTGGATATTATTGTATACAAGCTTGTAAAAGCTTACATATGCTCATCTTCTCTGCGTAAATCAGCTTTGGGGGCTCTTGCGCAGACATTGACAGCAGCTCAGTTATCTTATCTTCGGGAGCAATTTACATTGTTAGGACCAGACAAAAGCGGGTTTATCTCTATGCAGAATTTTAAGACGGCCTTGATGAAGAACTCTACCGATGCCATGAAGGATTCTAGGGTTCTTGATTACGTTAATATGGTGAGTTCTCTTCAATATAGAAAAGTAGATTTTGAAGAATTTTGTGCTGCTGCCATAAGTGTGCATCAGCTGGAAGGACTGGAGAGTTGGGAGCAACACGCACGTCGTGCATATGAGCTCTTTGAGAAGGATGGTAACAGGCCAATCGTGATTGAGGAACTTGCCTCGGAACTCGGGCTTAGCCCATCAGTCCCTGTTCATGTAGTTCTCCAAGACTGGATAAGACACTCAGATGGCAAGCTCAGTTTCTTGGGATTCGTCAGGCTTCTACACGGTGCATCGTCACGCTCATTGCAGAAGTCTTGA	1731	0.4604	MGLCNGKHIHKPQTKPQNPIIPGDVEPTVNSETSKASNFPFYSPSPLPSAFKNSPHHSSVSSTPLRIFKRPFPPPSPAKHIKAFLARRHGLVKPNEASIPEGNECEVGLDKDFGFSKQFVSKYELGEEVGRGHFGYTSSAKVKKGELKGQEVAVKVISKSKMTTAIAIEDVQREVKMLRALTGHKNLVQCYDAYEDDDNVYIVMELCKGGELLDRILSRGGKYLEEDAKPVMVQILSVVAYCHLQGVVHRDLKPENFLFSSKEEESPLKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSVGVIAYILLCGSRPFWARTESGIFRAVLKAELSFDEAPWPSLSSDARDFVKRLLSKDYRKRLTAAQALSHPWLSSYQDVKIPLDIIVYKLVKAYICSSSLRKSALGALAQTLTAAQLSYLREQFTLLGPDKSGFISMQNFKTALMKNSTDAMKDSRVLDYVNMVSSLQYRKVDFEEFCAAAISVHQLEGLESWEQHARRAYELFEKDGNRPIVIEELASELGLSPSVPVHVVLQDWIRHSDGKLSFLGFVRLLHGASSRSLQKS*	577

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl01g00580	576	SUPERFAMILY	EF-hand	414	566	IPR011992	-
	Eupl01g00580	576	FunFam	CDPK-related kinase 1	396	568	-	-
	Eupl01g00580	576	Pfam	Protein kinase domain	123	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl01g00580	576	ProSiteProfiles	EF-hand calcium-binding domain profile.	427	462	IPR002048	GO:0005509
	Eupl01g00580	576	Gene3D	Phosphorylase Kinase; domain 1	115	212	-	-
	Eupl01g00580	576	PANTHER	SERINE/THREONINE-PROTEIN KINASE	110	552	-	-
	Eupl01g00580	576	ProSitePatterns	Protein kinases ATP-binding region signature.	129	155	IPR017441	GO:0005524
	Eupl01g00580	576	CDD	STKc_CAMK	122	384	-	-
	Eupl01g00580	576	Gene3D	Transferase(Phosphotransferase) domain 1	213	396	-	-
	Eupl01g00580	576	FunFam	Calcium-dependent protein kinase SK5	295	389	-	-
	Eupl01g00580	576	FunFam	CDPK-related kinase 1	116	211	-	-
	Eupl01g00580	576	FunFam	CDPK-related kinase 3	115	287	-	-
	Eupl01g00580	576	SUPERFAMILY	Protein kinase-like (PK-like)	120	435	IPR011009	-
	Eupl01g00580	576	SMART	serkin_6	123	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Eupl01g00580	576	MobiDBLite	consensus disorder prediction	1	37	-	-
	Eupl01g00580	576	Gene3D	-	404	567	-	-
	Eupl01g00580	576	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	247	259	IPR008271	GO:0004672\|GO:0006468
	Eupl01g00580	576	ProSiteProfiles	Protein kinase domain profile.	123	385	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl01g00580	Eupl-Chr1	22225927	22236785	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl01g00580	1	574	EF-hand Containing Proteins	AT3G50530	67.143	0.0	845

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Eupl01g00580		Pkinase	5.7e-71	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl01g00580	K13412		-	cave:132162604	1002.28