Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00563 ATGCAAATGCATGAGTGGAGTATAAAGAGAGAAGCGTTTTCAGAAGCTCTGAGTATCTCCATCTTCATGGCGTCTGGAGGAGGAAATGCATCAGTGGAGTGGCACCAGAGACCTCCAAACCCTAAAAATCCGATCGTCTTCTTTGACGTTACTATAGGAAGCATTCCCGCTGGAAGAATCAAAATGGAGCTCTTCGCCGATATCGCGCCCAAAACCGCCGAAAATTTCAGGCAGTTCTGTACTGGTGAATACAGAAAAGCAGGAATACCAGTTGGGTACAAAGGGTGTCAGTTTCATAGGGTGATTAAGGAATTTATGATTCAAGCTGGTGACTTCTTGAAGGGTGATGGTAGTGGATGTGTATCCATCTATGGAAGTAAGTTTGAAGATGAAAATTTCATTGCAAAACACACTGGACCTGGCCTTTTGTCAATGGCAAATAGCGGACCAAGTACTAATGGATGTCAGTTCTTTATCACATGCTCGAAATGCGATTGGCTTGACAATAAGCATGTAGTCTTTGGGAGGGTGCTTGGAGAAGGTCTTTTGGTAGTCAGGAAGATTGAGAATGTGGCCTCTGGACCTAACAACCGGCCTAAACTTGCTTGCGTTATTGCTGAATGTGGGGAAATGTAG 636 0.4434 MQMHEWSIKREAFSEALSISIFMASGGGNASVEWHQRPPNPKNPIVFFDVTIGSIPAGRIKMELFADIAPKTAENFRQFCTGEYRKAGIPVGYKGCQFHRVIKEFMIQAGDFLKGDGSGCVSIYGSKFEDENFIAKHTGPGLLSMANSGPSTNGCQFFITCSKCDWLDNKHVVFGRVLGEGLLVVRKIENVASGPNNRPKLACVIAECGEM* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00563 211 CDD cyclophilin_ABH_like 44 209 - -
Eupl01g00563 211 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 47 210 IPR002130 GO:0000413|GO:0003755
Eupl01g00563 211 SUPERFAMILY Cyclophilin-like 34 211 IPR029000 -
Eupl01g00563 211 Gene3D - 31 211 IPR029000 -
Eupl01g00563 211 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 93 110 IPR020892 GO:0003755|GO:0006457
Eupl01g00563 211 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 98 110 IPR002130 GO:0000413|GO:0003755
Eupl01g00563 211 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 156 168 IPR002130 GO:0000413|GO:0003755
Eupl01g00563 211 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 141 156 IPR002130 GO:0000413|GO:0003755
Eupl01g00563 211 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 79 IPR002130 GO:0000413|GO:0003755
Eupl01g00563 211 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 169 184 IPR002130 GO:0000413|GO:0003755
Eupl01g00563 211 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 48 209 IPR002130 GO:0000413|GO:0003755
Eupl01g00563 211 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 46 211 - -
Eupl01g00563 211 FunFam Peptidyl-prolyl cis-trans isomerase 33 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00563 Eupl-Chr1 21772229 21784433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00563 58 199 U-box Gene Family AT5G67530 45.455 8.08e-29 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00563 K09567 - nnu:104590635 386.726