Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00555 ATGGCGACGATCAGCCTGCGAAAGGGAAACACGCGTCTCCCGCCCGAAGTGAACAGAGTTCTGTACGTTCGAAATCTCCCCTTCAACATTTCGAGCGAGGAGATGTACGATATCTTTGGCAAATACGGTGCCATCCGGCAGATACGTATAGGTACGAACAAGGATACGAGGGGTACGGCCTTCGTCGTCTACGAAGACATCTACGATGCCAAGACGGCCGTTGATCACCTGTCAGGGTTCAACGTCGCAAATCGCTATCTGATCGTGTTGTACTATCAGCAGGCGAAGATGAGCAAGAAGGTCGATCAGAAGAAGAAGGAGGACGAGATCGCAAGGATGCAGGAGAAGTATGGAGTGTCCACCAAAGACAAGTGA 375 0.512 MATISLRKGNTRLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKVDQKKKEDEIARMQEKYGVSTKDK* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00555 124 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 21 109 - -
Eupl01g00555 124 CDD RRM_SF3B14 17 93 IPR034150 -
Eupl01g00555 124 SUPERFAMILY RNA-binding domain, RBD 7 101 IPR035979 GO:0003676
Eupl01g00555 124 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Eupl01g00555 124 FunFam splicing factor 3B subunit 6-like protein 15 118 - -
Eupl01g00555 124 SMART rrm1_1 20 90 IPR000504 GO:0003723
Eupl01g00555 124 Gene3D - 15 119 IPR012677 -
Eupl01g00555 124 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00555 Eupl-Chr1 21436526 21437443 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00555 18 91 Eukaryotic Initiation Factors Gene Family AT4G34110 28.571 8.70e-06 41.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00555 K12833 - nnu:104590492 247.284