Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00553 ATGGAGCCTTACCCTAAAAGATCCCGCTCTGAAAACGGTGGGTTTGCGTTATCAAACCCTAGTAGGATTCCTGCGCAGCAAAGCAATGGAGGTGGTGATCTCGAATGCAGGCGGTTCAATACCCCGGAAGGTTGCCCGTTTGGATCAACTTGCAGATTCCGTCACGTTTCAGCTGATGGTCGAGATGTTGGACCACAGGGCCTTTCTTCTGGCGGCAAGCCTAAACCCTGCATGAAGTTCTTCAGCACGTCGGGTTGTCCGTTTGGAGAATCTTGCCACTTCCTGCATTATGTACCTGGGGGTCTCAGTTCTTTGGGTTTAGCCCCTGTTGTCTCGCTCTCGGCTGCTTCAGCTTCTTCAGCTGCTGCCTCTCAGAGGAAACCGGCGGGGCCCATTGGGGATCCAAGTGTCACTGTTAGTGGCTTTAAGACAAAGCTTTGCAACCGGTTTAACACCGCTGAGGGCTGTCGATTTGGTGACAAGTGTCATTTTGCTCATGGGGAGAGTGACCTGCGACCACAGCACAATCAGTCTCGAGGGAACGGCGGGAGAGTTCCGGTGGAAGGACCAAGGGGGACAGGCCCTCCCGGATTCAACAATGGGGGCGCTGACTTTTCAAACTCAGCAACATTTGGAAATATGTCGAATTTTAATTCTCAAGGCTTTGGTGAGCCAAACCCACCTGGAGTTGCAGCTAGTGATGACTCTGCAAGTTATGCTGCTGAACCGATTGGTGAAAATGTACAGGTATATTGA 756 0.5172 MEPYPKRSRSENGGFALSNPSRIPAQQSNGGGDLECRRFNTPEGCPFGSTCRFRHVSADGRDVGPQGLSSGGKPKPCMKFFSTSGCPFGESCHFLHYVPGGLSSLGLAPVVSLSAASASSAAASQRKPAGPIGDPSVTVSGFKTKLCNRFNTAEGCRFGDKCHFAHGESDLRPQHNQSRGNGGRVPVEGPRGTGPPGFNNGGADFSNSATFGNMSNFNSQGFGEPNPPGVAASDDSASYAAEPIGENVQVY* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00553 251 Gene3D - 29 103 - -
Eupl01g00553 251 ProSiteProfiles Zinc finger C3H1-type profile. 71 99 IPR000571 GO:0046872
Eupl01g00553 251 ProSiteProfiles Zinc finger C3H1-type profile. 35 58 IPR000571 GO:0046872
Eupl01g00553 251 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 168 IPR000571 GO:0046872
Eupl01g00553 251 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 73 96 IPR000571 GO:0046872
Eupl01g00553 251 MobiDBLite consensus disorder prediction 169 251 - -
Eupl01g00553 251 FunFam Zinc finger CCCH domain-containing protein 136 173 - -
Eupl01g00553 251 Pfam RNA-binding, Nab2-type zinc finger 36 55 - -
Eupl01g00553 251 PANTHER CCCH ZINC FINGER/TIS11-RELATED 72 195 IPR045877 GO:0003729
Eupl01g00553 251 MobiDBLite consensus disorder prediction 200 223 - -
Eupl01g00553 251 SUPERFAMILY CCCH zinc finger 142 172 IPR036855 GO:0046872
Eupl01g00553 251 SMART c3hfinal6 73 98 IPR000571 GO:0046872
Eupl01g00553 251 SMART c3hfinal6 32 57 IPR000571 GO:0046872
Eupl01g00553 251 SMART c3hfinal6 141 168 IPR000571 GO:0046872
Eupl01g00553 251 ProSiteProfiles Zinc finger C3H1-type profile. 141 169 IPR000571 GO:0046872
Eupl01g00553 251 SUPERFAMILY CCCH zinc finger 73 97 IPR036855 GO:0046872
Eupl01g00553 251 Gene3D - 135 174 - -
Eupl01g00553 251 MobiDBLite consensus disorder prediction 12 28 - -
Eupl01g00553 251 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00553 Eupl-Chr1 21384724 21397172 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl01g00553 zf-CCCH 6.8e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00553 - - nnu:104590489 380.563