Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00552 ATGGGTATCTGTTTCTCCCATGGCAATATCATCGAAAGCTCAAAAACAAGAAAAGGCGAATCAATTTCCGACAACAAGGCCAGGAAATTCAGGAACCTAGTTTCAGAAAATGCTGTCCCACCCAAGCCGTCGGGCACTAAAGCCACCAATGGATTGGCAACCAAGCCTTCCAAGCCTGCCCTGATTCTAATCGGACCCGTCTTGGGCAGGCCGATGGAAGACATCCAATCAGTCTACACAATAGGGAAAGAGCTCGGACGGGGACAATTCGGTGTCACCCATCTATGTACCCACAAGGCTACAGGCGAGCAATTTGCGTGTAAGACAATAGCTAAACGAAAACTTGTGAGCAAGGAAGACATTGAGGATGTCAGAAGGGAAGTTCAGATCATGCACCATTTGACAGGTCAACCCAACATTGTAGAATTGAAAGGAGCTTTTGAGGATAAGCAATCAGTTCATTTGGTTATGGAATTATGCGCCGGAGGAGAGCTCTTCGATCGGATTATTGCAAAGGGGCATTATACGGAACGTGAGGCAGCTTCGCTGCTTAGGACAATTGTTCAGATTGTTCATACATGCCATTCAATGGGAGTCATCCATAGGGATCTCAAACCAGAGAATTTCCTTCTGTTGAACAAGGATGAGAATGCCCCTCTCAAGGCTACGGATTTCGGTCTCTCTGTGTTCTTCAAGCAAGGCGAACTGTTCAGAGACATCGTCGGTAGCGCATATTATATTGCACCCGAAGTATTGAAGAAAAGATACGGACCAGAAGTCGATATATGGAGTATCGGAATCATGCTGTATATTCTTCTCTGTGGAGTTCCTCCTTTTTGGGCTGAATCAGAGCATGGAATTTTCAATGCAATCTTACGTGGACACATCGATTTCACAAGTGATCCATGGCCATCGATTTCATCTGGGGCTAAGGATCTGGTCAGGAAGATGCTCAATGCAGACCCCAAGCAGAGGTTAACATCATTCCAAGTTCTTGATCATCCATGGATCAAAGAAGATGGAGAAGCACCCGATACACCTCTTGACAATGCTGTCTTCAACAGGCTTAAACAGTTCAGAGCAATGAACAAGTTCAAGAAAGTCGCTCTTCGGGTGATAGCAGGTTGTCTATCAGAGGAAGAAATCATGGGATTAAAGGCAATGTTCAAGAACATGGACACTGACAACAGTGGAACTATAACATTAGAAGAGCTGAAGCAAGGACTCTCCAAGCAAGGAACAAAACTATCTGAGTATGAAGTTAAACAGCTACTGGAAGCTGCCGACGCAGATGGCAATGGAACCATAGACTACGATGAGTTCATCACGGCAACAATGCACATGAACAAAATGGACAGAGAAGAGCATCTCTACACTGCATTCCAATACTTCGATAAAGATAATAGTGGGTTTATTACGACAGAAGAACTAGAGCAAGCACTTCGAGAGTTCGGCATGCATGATGGGAGGGACATAAAGGAAATCCTTTCTGAAGTCGACGCTGATAATGATGGACGGATCAACTACGACGAGTTTGTGGCGATGATGACAAAAGGGAACATTGAAACCAACCCAAAGAAGAGACGGGATGTCTTCGTCTGA 1602 0.4494 MGICFSHGNIIESSKTRKGESISDNKARKFRNLVSENAVPPKPSGTKATNGLATKPSKPALILIGPVLGRPMEDIQSVYTIGKELGRGQFGVTHLCTHKATGEQFACKTIAKRKLVSKEDIEDVRREVQIMHHLTGQPNIVELKGAFEDKQSVHLVMELCAGGELFDRIIAKGHYTEREAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLNKDENAPLKATDFGLSVFFKQGELFRDIVGSAYYIAPEVLKKRYGPEVDIWSIGIMLYILLCGVPPFWAESEHGIFNAILRGHIDFTSDPWPSISSGAKDLVRKMLNADPKQRLTSFQVLDHPWIKEDGEAPDTPLDNAVFNRLKQFRAMNKFKKVALRVIAGCLSEEEIMGLKAMFKNMDTDNSGTITLEELKQGLSKQGTKLSEYEVKQLLEAADADGNGTIDYDEFITATMHMNKMDREEHLYTAFQYFDKDNSGFITTEELEQALREFGMHDGRDIKEILSEVDADNDGRINYDEFVAMMTKGNIETNPKKRRDVFV* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00552 533 FunFam calcium-dependent protein kinase 1 165 344 - -
Eupl01g00552 533 ProSitePatterns EF-hand calcium-binding domain. 465 477 IPR018247 -
Eupl01g00552 533 ProSitePatterns Protein kinases ATP-binding region signature. 85 112 IPR017441 GO:0005524
Eupl01g00552 533 FunFam Calcium-dependent protein kinase 1 345 520 - -
Eupl01g00552 533 Pfam EF-hand domain pair 385 445 IPR002048 GO:0005509
Eupl01g00552 533 Pfam EF-hand domain pair 454 516 IPR002048 GO:0005509
Eupl01g00552 533 Gene3D Phosphorylase Kinase; domain 1 80 164 - -
Eupl01g00552 533 Gene3D Transferase(Phosphotransferase) domain 1 165 345 - -
Eupl01g00552 533 SMART efh_1 384 412 IPR002048 GO:0005509
Eupl01g00552 533 SMART efh_1 456 484 IPR002048 GO:0005509
Eupl01g00552 533 SMART efh_1 491 519 IPR002048 GO:0005509
Eupl01g00552 533 SMART efh_1 420 448 IPR002048 GO:0005509
Eupl01g00552 533 ProSiteProfiles EF-hand calcium-binding domain profile. 452 487 IPR002048 GO:0005509
Eupl01g00552 533 CDD STKc_CAMK 78 336 - -
Eupl01g00552 533 SMART serkin_6 79 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl01g00552 533 Gene3D - 355 516 - -
Eupl01g00552 533 SUPERFAMILY EF-hand 377 522 IPR011992 -
Eupl01g00552 533 ProSiteProfiles EF-hand calcium-binding domain profile. 491 522 IPR002048 GO:0005509
Eupl01g00552 533 Gene3D - 378 446 - -
Eupl01g00552 533 FunFam Calcium-dependent protein kinase 1 81 164 - -
Eupl01g00552 533 ProSiteProfiles EF-hand calcium-binding domain profile. 380 415 IPR002048 GO:0005509
Eupl01g00552 533 ProSiteProfiles Protein kinase domain profile. 79 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl01g00552 533 ProSitePatterns EF-hand calcium-binding domain. 429 441 IPR018247 -
Eupl01g00552 533 Pfam Protein kinase domain 79 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl01g00552 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 74 512 - -
Eupl01g00552 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Eupl01g00552 533 ProSiteProfiles EF-hand calcium-binding domain profile. 416 451 IPR002048 GO:0005509
Eupl01g00552 533 ProSitePatterns EF-hand calcium-binding domain. 500 512 IPR018247 -
Eupl01g00552 533 SUPERFAMILY Protein kinase-like (PK-like) 64 362 IPR011009 -
Eupl01g00552 533 ProSitePatterns EF-hand calcium-binding domain. 393 405 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00552 Eupl-Chr1 21379675 21383704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00552 1 531 EF-hand Containing Proteins AT5G12180 78.343 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Eupl01g00552 Pkinase 2.1e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00552 K13412 - psom:113309665 924.08