Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00549 ATGAAGAAGAAGGTCCCGTGCTGCTCGGTATGCCAGATGAGATACAACGAGGAGGAGAGGGTCCCGCTCCTCCTCCAATGCGGGCACGGCTTCTGCAAAGAATGCCTCTCTCGGTTGTTCTCTCAATCTACCGACACCACTGTCTCTTGCCCTCGCTGTCGCCACCTCTCCCTCGTTGGCAACTCCGTCCACGCCCTCCGTAAGAACTTTGCTGTTCTCGCTCTCATCCACTCCACTGCTACCACCGCAACCACTGCTGCCGCCGAATTTGACTGTGACGTTACCGACGACGACGACGACGATGATGCCGAGGACGGATTCGCCCGTGGCAGCCGCAGCCACCAGTCTCACGCTTCCAGCTCCTGCTGCAGCAGCAACGGTGGCTCGGTTATTGACCTGGCCTCTCATCATGACCTGAGGCTTATTCGGCGGCTTGGAGAGGGGCGGAGGGCTGGAGTGGAGATGTGGTCCGCCGTGCTCTCTGGTGGAAGGTGCCGCCATCGTGTGGCGGTGAAGAGGGTGACGGTTGGAGATGAGCTGGATTTGGTTTTGGTGCAGAGTCAGCTCGAGAATCTCCGTCGAGCGTCGATGTGGTGCCGGAATGTGTGCACGTTCCATGGTGCTACGAGGATGGACGGTTCCCTATGCCTTATTATGGATAGGTATTCTGGCTCTATTCAGTCTGAGATGCAGCAGAACGAAGGGCGCCTCACTCTGGAGCAAATCCTCAGATATGGGGCAGACATCGCTCGCGGGGTGGCTGAGCTCCATGCAGCAGGTGTAGTCTGTATGAATCTGAAGCCATCCAACCTTCTTTTGGATGCAAGTGGTCGAGCAGTGGTCTCTGATTATGGTCTTCCATCAATTCTGAAGAAGCCTTCCTGTCGAAAAGCTCGATCAGTTCCAGAGGATGACTCTTCAACAATACATTCGTGTATGGATTGTACCATGCTGAGTCCACACTATGCAGCTCCTGAGGCATGGGAGCCATTAAAGAAGTCATTAAAGTTATTCTGGGATGATGCAATTGGTATATCCACAGAATCAGATGCATGGAGTTTTGGCTGTACCCTGGTGGAAATGTGCACTGGTTCCATCCCGTGGGCTGGTTTAAGTTCAGAGGAAATCTATCAATCCGTTGTGAAGGTTCGGAGGCTGCCCCCACAGTATGCAAGTGTAGTAGGTGTTGGGATTCCTAGGGAATTATGGAAGATGATTGGTGATTGCCTACAGTTCAAGGCATCAAAGAGACCAACTTTCCATGCAATGCTCGCAATATTCCTTCGCCATTTGCAAGAGATACCTCGCAGCCCTCCTGCAAGCCCTGATAATGACTTCACCAACGGTCCTGTTACGAATGCCATGGAACCATCCCCTAGATCTGTCTTGGAGGTTTTCCAGGGTAACCCGAACTTCTTACACCAACTTGTATCTGAAGGGGATTTGGATGGTGTTAGAGATTTGTTTGCGAAAGCTGCATCGGGAAACAATAGCAGCTCGATTGGTTCTCTATTAGAGGCACAGAATGCTGATGGCCAAACTGCTCTGCACTTGGCTTGCAGACGGGGTTGCGTAGAAATTGTTGAAGCTATTTTGGAGTACAAGGAGGTAGATGTGGATGTCCTTGACAAAGATGGAGACCCTCCAATTGTGTTTGCTTTAGCAGCTGGATCCCCAGAATGCGTTCGTGCTCTCATCAGAAGATTATCTAATGTTAAATCTAGGCTAAGGGATGGCCTCGGTCCATCTGTTGCTCATGTTTGTGCTTACCATGGCCAACCAGATTGCATGCGTGAGTTACTATTGGCAGGGGCTGATCCCAATGCAGTGGATGATGAAGGTGAATCTGTGCTGCACAGAGCCATTGCGAAAAAATACACAGACTGTGCTATTGTTATATTGGAAAATGGAGGCTGCAGTTCAATGGGTGTCATGAATTCGAAAAATTTGACACCTTTGCACATGTGCGTAGCAACATGGAATGTGGCCGTTTTGAGAAGATGGGCAGAGGTTGCATCCCAAGAAGAGATCACTGAAGCAATTGATATACCAAGTCCAGTTGGAACTGCTCTGTGTATGGCAGCTGCTCTAAAGAAAGACCATGAAACTGAGGGTAGAGAGTTGGTAAGAATATTGCTTGCTGCTGGGGCAGATCCAACAGCTCAAGATACACAGCATTGGCGAACAGCTTTGCATACGGCAGCTATAGCTAATGATGTTGAGTTGGTCAAGATTATTCTGGATGCTGGAGTTGATGTGAACATCAGGAATGTGCACAATACAATACCGCTTCATGTTGCATTGGCCAGAGGTTCAAAATTATGTATCAGGTTGCTATTATCTGCTGGAGCAAACTGTAATTTGCAGGATGATGAAGGTGACAATGCTTTCCATATAGCAGCTGATGCAGCAAAGATGATACGGGAAAATCTTGAATGGATCGTTGTTATGCTGCAGTATCCAGGTGCTGCTATTGACGTCAGAAACCACAGTGGTAAGACATTACGTGATTTTTTGGAAGCCCTGCCTCGGGAATGGATTTCAGAAGATCTGATGGACGCACTCGTGAACAAGGGAATTCATCTGTCTCCTACCATATATGAGGTAGGGGATTGGGTGAAATTCAAGAGTAGCGTGAAGACTCCTGCTTATGGGTGGCAAGGTGCAAGGCATAAGAGTGTTGGTTTTGTTCAGTGTGTCCAGGACAAGGACAATCTCATTGTGTCATTTTGCTCTGGAGAGGCTCGTGTTTTGACAAAGGAGGTTATAAAAGTGATCCCATTAGATAGGGGACAACACGTGCAACTTAAAGAAGATGTTAAAGAGCCTAGGTTTGGGTGGCGTGGTCAATCACGTGATAGCATTGGAACTGTTTTATGTGTTGATGATGATGGGATACTACGTGTTGGCTTTCCTGGAGCATCCAGGGGTTGGAAAGCTGATCCTGCAGAAATGGAAAGGGTTGAAGAATTCAAGGTTGGTGACTGGGTTAGGATTCGCCCCTCTCTAACAACTGCAAAACATGGATTGGGAGCTGTCACACCTGGGAGCATTGGGATAGTGTACTGTATTAGACCAGACAATAGTCTTTTGTTGGAACTGAGCTATCTACCGAGTCCTTGGCACTGCGAACCAGAGGAGGTTGAACCTGTTGCGGCATTCAGGATTGGTGACCACATATGTGTGAAGCGATCTGTTGCAGAGCCGCGGTACGCTTGGGGCGGTGAGACACATCATAGTGTAGGAAGAATAAGTGAAATAGATAGTGATGGTCTATTGATAATTGAAATACCAAATAGGCCTATTGCATGGAAAGCTGATCCTTCTGACATGGAAAAGGTGGAGGATTTCAAGGTTGGGGATTGGGTGCGAGTAAAAGCTTCAGTATCGTCTCCAAAATATGGATGGGAGGATGTTACGCGGAACAGTATTGGAATAATCCATAGCCTGGAGGAAGATGGAGATATGGGTGTTGCGTTCTGCTTCAGGAGCAAGCCTTTTAGTTGCTCTGTGACGGACATGGAAAAGGTGCCACCTCTTGAAGTGGGACAAGCAATTCATGTGATGCCATCTGTTACTCAGCCACGACTTGGATGGTCAAATGAAACTGCAGCTACTATTGGGAAGATCGCAAGGATAGACATGGATGGGACTCTGAATGTGAGGGTGGCTGGGAGAGTTAGCTTGTGGAAAGTTGCTCCTGGAGATGCGGAACAGCTTTCAGGATTTGAAGTTGGCGACTGGGTTCATTTGAAGCCAAGTCTGGGGACTAGACCCACTTATGACTGGAACAGTATTGGAAAAGAAGGTTTAGCAGTGGTGCACAGTGTGCAGGATACTGGTTATTTAGAGCTGGCTTGTTGTTTCCGGAAAGGCAGGTGGATGACTCACAGTACAGATGTTGAAAAGGTTGCATGCTTGAAAATCGGGCAGCATGTCCAGTTCCGTGCTGGACTGGTTGAGCCAAGGTGGGGGTGGAGAGGTGCCCACCCTGATTCAAGAGGCGTTATAACTGGTGTGCATGCTGATGGAGAAGTGAGGGTGGCATATGCCGGTGTGTTGGGGATGTGGAGAGGAGATCCTGCAGATCTTGAGATAGAGGAGATGTATGACGTGGGAGAGTGGGTGAGAATAAGAAATGATGCAAGTGGTTGGAAATCCCTAAGACCTGGGAGTATTGGCATTGTGCAAGGAATAGGGTATGAAGGAGATGAATGGGATGGAAGGATCCTGGTTGGGTTTTGTGGGGAGCAAGAAAAGTGGGTGGGGCCAGCTTCCCAGCTCGAAAAAGCGGATGGACTTGTGGTTGGGCAACAGGTGAGAGTAAAGTTATGCGTGAAGCAGCCAAGGTTCGGCTGGTCAGGTCATAGCCATGCAAGTGTGGGGACTATATCTGCAATAGATGCTGATGGAAAGCTGAGGATCTATACACCTGCAGGTTCGAAAGCGTGGATGCTGGACCCTGCAGAAGTGGAGAAGGTGGAGGAAGAGGAACTGCGCATAGGATACTGGGTAAGGGTGAGGGCATCCGTGGTGACACCAACCCACCAGTGGGGTGAAGTGAGCCATTCGAGTATAGGGGTGGTGCACAGGATAGAGGATGGGGAGCTTTGGGTGGCTTTCTGCTTCGTGGAGAAGTTGTGGGTGTGTAAGGCATGGGAGATGGAGAGGGTGAGACCATTCAAGGTGGGGGACAAAATAAAGATTAGAGGGGGATTGGTGAGCCCAAGGTGGGGATGGGGGATGGAGACACATGCAAGCAAGGGGGAGGTGGTTGGCGTGGATGCAAATGGTAAGCTACGGATCAGATTCCAGTGGAGAGAAGGCAGGCTATGGGTTGGAGACCCTGCCGATATTGTTCTTGATGAGAGCTCCATTGGCACTTCATAG 4890 0.4928 MKKKVPCCSVCQMRYNEEERVPLLLQCGHGFCKECLSRLFSQSTDTTVSCPRCRHLSLVGNSVHALRKNFAVLALIHSTATTATTAAAEFDCDVTDDDDDDDAEDGFARGSRSHQSHASSSCCSSNGGSVIDLASHHDLRLIRRLGEGRRAGVEMWSAVLSGGRCRHRVAVKRVTVGDELDLVLVQSQLENLRRASMWCRNVCTFHGATRMDGSLCLIMDRYSGSIQSEMQQNEGRLTLEQILRYGADIARGVAELHAAGVVCMNLKPSNLLLDASGRAVVSDYGLPSILKKPSCRKARSVPEDDSSTIHSCMDCTMLSPHYAAPEAWEPLKKSLKLFWDDAIGISTESDAWSFGCTLVEMCTGSIPWAGLSSEEIYQSVVKVRRLPPQYASVVGVGIPRELWKMIGDCLQFKASKRPTFHAMLAIFLRHLQEIPRSPPASPDNDFTNGPVTNAMEPSPRSVLEVFQGNPNFLHQLVSEGDLDGVRDLFAKAASGNNSSSIGSLLEAQNADGQTALHLACRRGCVEIVEAILEYKEVDVDVLDKDGDPPIVFALAAGSPECVRALIRRLSNVKSRLRDGLGPSVAHVCAYHGQPDCMRELLLAGADPNAVDDEGESVLHRAIAKKYTDCAIVILENGGCSSMGVMNSKNLTPLHMCVATWNVAVLRRWAEVASQEEITEAIDIPSPVGTALCMAAALKKDHETEGRELVRILLAAGADPTAQDTQHWRTALHTAAIANDVELVKIILDAGVDVNIRNVHNTIPLHVALARGSKLCIRLLLSAGANCNLQDDEGDNAFHIAADAAKMIRENLEWIVVMLQYPGAAIDVRNHSGKTLRDFLEALPREWISEDLMDALVNKGIHLSPTIYEVGDWVKFKSSVKTPAYGWQGARHKSVGFVQCVQDKDNLIVSFCSGEARVLTKEVIKVIPLDRGQHVQLKEDVKEPRFGWRGQSRDSIGTVLCVDDDGILRVGFPGASRGWKADPAEMERVEEFKVGDWVRIRPSLTTAKHGLGAVTPGSIGIVYCIRPDNSLLLELSYLPSPWHCEPEEVEPVAAFRIGDHICVKRSVAEPRYAWGGETHHSVGRISEIDSDGLLIIEIPNRPIAWKADPSDMEKVEDFKVGDWVRVKASVSSPKYGWEDVTRNSIGIIHSLEEDGDMGVAFCFRSKPFSCSVTDMEKVPPLEVGQAIHVMPSVTQPRLGWSNETAATIGKIARIDMDGTLNVRVAGRVSLWKVAPGDAEQLSGFEVGDWVHLKPSLGTRPTYDWNSIGKEGLAVVHSVQDTGYLELACCFRKGRWMTHSTDVEKVACLKIGQHVQFRAGLVEPRWGWRGAHPDSRGVITGVHADGEVRVAYAGVLGMWRGDPADLEIEEMYDVGEWVRIRNDASGWKSLRPGSIGIVQGIGYEGDEWDGRILVGFCGEQEKWVGPASQLEKADGLVVGQQVRVKLCVKQPRFGWSGHSHASVGTISAIDADGKLRIYTPAGSKAWMLDPAEVEKVEEEELRIGYWVRVRASVVTPTHQWGEVSHSSIGVVHRIEDGELWVAFCFVEKLWVCKAWEMERVRPFKVGDKIKIRGGLVSPRWGWGMETHASKGEVVGVDANGKLRIRFQWREGRLWVGDPADIVLDESSIGTS* 1630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00549 1629 MobiDBLite consensus disorder prediction 101 122 - -
Eupl01g00549 1629 SUPERFAMILY Protein kinase-like (PK-like) 136 445 IPR011009 -
Eupl01g00549 1629 Gene3D - 459 672 IPR036770 -
Eupl01g00549 1629 PRINTS Ankyrin repeat signature 512 527 IPR002110 GO:0005515
Eupl01g00549 1629 PRINTS Ankyrin repeat signature 742 756 IPR002110 GO:0005515
Eupl01g00549 1629 ProSiteProfiles Ankyrin repeat region circular profile. 726 757 - -
Eupl01g00549 1629 FunFam E3 ubiquitin-protein ligase KEG 725 858 - -
Eupl01g00549 1629 ProSiteProfiles Ankyrin repeat profile. 511 544 IPR002110 GO:0005515
Eupl01g00549 1629 ProSiteProfiles Ankyrin repeat profile. 726 758 IPR002110 GO:0005515
Eupl01g00549 1629 Pfam Mind bomb SH3 repeat domain 991 1111 IPR040847 -
Eupl01g00549 1629 Pfam Mind bomb SH3 repeat domain 920 985 IPR040847 -
Eupl01g00549 1629 Pfam Mind bomb SH3 repeat domain 1500 1618 IPR040847 -
Eupl01g00549 1629 Pfam Mind bomb SH3 repeat domain 1370 1491 IPR040847 -
Eupl01g00549 1629 Pfam Mind bomb SH3 repeat domain 867 911 IPR040847 -
Eupl01g00549 1629 Pfam Mind bomb SH3 repeat domain 1243 1364 IPR040847 -
Eupl01g00549 1629 Pfam Mind bomb SH3 repeat domain 1117 1235 IPR040847 -
Eupl01g00549 1629 Pfam Ankyrin repeats (many copies) 583 632 IPR002110 GO:0005515
Eupl01g00549 1629 SUPERFAMILY Ankyrin repeat 500 832 IPR036770 -
Eupl01g00549 1629 ProSiteProfiles Ankyrin repeat profile. 580 612 IPR002110 GO:0005515
Eupl01g00549 1629 PANTHER E3 UBIQUITIN-PROTEIN LIGASE KEG 4 1623 IPR044584 GO:0004842|GO:0006952|GO:0009738|GO:0016567
Eupl01g00549 1629 SMART ANK_2a 759 788 IPR002110 GO:0005515
Eupl01g00549 1629 SMART ANK_2a 580 609 IPR002110 GO:0005515
Eupl01g00549 1629 SMART ANK_2a 613 644 IPR002110 GO:0005515
Eupl01g00549 1629 SMART ANK_2a 687 721 IPR002110 GO:0005515
Eupl01g00549 1629 SMART ANK_2a 545 574 IPR002110 GO:0005515
Eupl01g00549 1629 SMART ANK_2a 726 755 IPR002110 GO:0005515
Eupl01g00549 1629 SMART ANK_2a 792 827 IPR002110 GO:0005515
Eupl01g00549 1629 SMART ANK_2a 511 541 IPR002110 GO:0005515
Eupl01g00549 1629 Gene3D Transferase(Phosphotransferase) domain 1 132 433 - -
Eupl01g00549 1629 ProSitePatterns Zinc finger RING-type signature. 27 36 IPR017907 -
Eupl01g00549 1629 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 87 IPR013083 -
Eupl01g00549 1629 ProSiteProfiles Ankyrin repeat profile. 759 791 IPR002110 GO:0005515
Eupl01g00549 1629 SUPERFAMILY RING/U-box 7 57 - -
Eupl01g00549 1629 Pfam Protein tyrosine and serine/threonine kinase 139 424 IPR001245 GO:0004672|GO:0006468
Eupl01g00549 1629 Gene3D - 673 843 IPR036770 -
Eupl01g00549 1629 ProSiteProfiles Protein kinase domain profile. 139 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl01g00549 1629 ProSiteProfiles Ankyrin repeat region circular profile. 511 533 - -
Eupl01g00549 1629 ProSiteProfiles Zinc finger RING-type profile. 8 54 IPR001841 -
Eupl01g00549 1629 CDD RING-HC_KEG-like 5 61 - -
Eupl01g00549 1629 ProSiteProfiles Ankyrin repeat region circular profile. 759 791 - -
Eupl01g00549 1629 SMART ring_2 8 53 IPR001841 -
Eupl01g00549 1629 FunFam E3 ubiquitin-protein ligase KEG 451 681 - -
Eupl01g00549 1629 Pfam Ankyrin repeats (3 copies) 491 568 IPR002110 GO:0005515
Eupl01g00549 1629 Pfam Ankyrin repeats (3 copies) 705 790 IPR002110 GO:0005515
Eupl01g00549 1629 Pfam RING-type zinc-finger 8 51 IPR027370 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00549 Eupl-Chr1 21226379 21253040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00549 168 424 MAP Kinase Kinase Kinase AT4G18950 25.475 1.68e-15 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Eupl01g00549 PK_Tyr_Ser-Thr 3.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00549 K16279 - nnu:104611359 2836.6