Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00546 ATGGAGAGAGAAGAACCTAACCAGGATACACCATCTCTCCAAAACAATAACAAGGAAGAGTTTTTGAGAAAACCATCACTTGGTTTTACCTCTGGTGTTAGTGGTGGTGGTGGTGGTAGTGATCGGTTGAAAAGGGATGAATGGAGTGAAGGTGCAGTCTCGAGCCTTCTCGACGCTTATGAATCGAAATGGGTTCTTCGAAACAGGGCCAAGCTCAAGGGACATGACTGGGAAGATGTTGCGCGCCATGTTTCTTCGCGTACCAATTCTACCAAGTCACCCAAGACACAAACACAGTGCAAGAACAAGATTGAGTCGATGAAGAAACGGTACCGGTCGGAGTCAGCTACAGCGGATTCCTCATCGTGGCCTCTCTTCCAACGACTCGATCTCTTGCTCCGTTGCAGGACTCATCCTCCTCCTAGTACTCCTACTCCTACTCACCCTCCTCTCGAGCTAGATCAACTACCACCACCACCACCACCACCTCCTACTGGAATCCACCAAGGCTCACATGAGTCCAATGGTGTCGAACTGGTGGCCAAGGAAGAGGGTGTAGGAGCCAAGAATTTCAACAATGGATCGGACAGGATCTCCATGGAATTGGATAGTAGCACACCGGTCTCCGATACCATCAAAGAAAAGCTGAAGAAAATAAAGATGGAGAAGATGATGATGAAGAAGAAGAAGAAGAAGGGGCGACGAAGGGAGGATTGGGAGGTGGCGGAGAGCATTCGATGGCTCGCTGAGGTAGTGGTGAGATCAGAGCAAGCAAGGATGGATACAATGAGGGAACTAGAGAGGATGAGAGTCGAAGCGGAGACGAAGAAAGGGGAGATGGATCTCAAGCGAACTGAGATAATCGCGAACACACAGTTGCAGATTGCTCGGCTCCTCGCCGGCAACGGCGAAGGCATTGATTCTTCATTGAGAATTGGAAGAAATTAA 948 0.4926 MEREEPNQDTPSLQNNNKEEFLRKPSLGFTSGVSGGGGGSDRLKRDEWSEGAVSSLLDAYESKWVLRNRAKLKGHDWEDVARHVSSRTNSTKSPKTQTQCKNKIESMKKRYRSESATADSSSWPLFQRLDLLLRCRTHPPPSTPTPTHPPLELDQLPPPPPPPPTGIHQGSHESNGVELVAKEEGVGAKNFNNGSDRISMELDSSTPVSDTIKEKLKKIKMEKMMMKKKKKKGRRREDWEVAESIRWLAEVVVRSEQARMDTMRELERMRVEAETKKGEMDLKRTEIIANTQLQIARLLAGNGEGIDSSLRIGRN* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00546 315 FunFam Trihelix transcription factor ASIL2 48 113 - -
Eupl01g00546 315 MobiDBLite consensus disorder prediction 139 167 - -
Eupl01g00546 315 Pfam Myb/SANT-like DNA-binding domain 45 131 IPR044822 -
Eupl01g00546 315 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 18 300 IPR044823 -
Eupl01g00546 315 MobiDBLite consensus disorder prediction 83 102 - -
Eupl01g00546 315 MobiDBLite consensus disorder prediction 136 173 - -
Eupl01g00546 315 Coils Coil 263 283 - -
Eupl01g00546 315 Gene3D - 48 113 - -
Eupl01g00546 315 MobiDBLite consensus disorder prediction 86 101 - -
Eupl01g00546 315 MobiDBLite consensus disorder prediction 1 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00546 Eupl-Chr1 21151528 21152789 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00546 30 157 Trihelix Transcription Factor Family AT3G14180 36.364 1.39e-18 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Eupl01g00546 Myb_DNA-bind_4 9.5e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00546 - - nnu:104611355 394.815