Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00532 ATGGACGTAGAGGAGGAGCAAGCGATTGAAATTTGCAGTCTTTCCATCCCAGAACAGGTCAGTGATGATGATCAGAAGGGGATCAAGTGTACGACCTCTTCTTGCATAATGCTGTCCGACAATGAGGGGTTCTGCGCGATTTGCTTGGAGAAGATAGCTCTTCAGGAGACTGCTCTCGTTAAAGGTTGCGAGCATGCTTACTGTGTGACTTGCATCCTAAGGTGGGCCACATACCATCAGAATCCTTCTTGTCCCCAGTGCAAGCATCCATTTCAGTTTCTGAATGTTCATCGTTCGCTCAATGGCAGCATCCATGACTACATGTTCGAGGAGAGTGTTTGCCTACTTCTTAGAGCCACATGGTTCATGCCTTTGACAGTGGAGGCGCAGGAAGAGCAGTATGATGAAGATATTTATCAATACGAGGATGATGATGGCGACCTAGATGAAGTTTATTTAAGCAGTTCATCGAGTCTTCGTATTGGTAACCGGAGGTGGGGTGATAATGGTTATGTTAGGGCAGGGCGTAAAGAAGCGAGGCCCATCAATCGAGAAAATTTCCAAGATCCTGATGCTGGTCCATCTCATGGTCCTAGAAAGAAAGATGCAACCGGACGACGGGCAAAGAGGGCGATGAAGCGTGAGGCTGCAGATAAGGCTGCTGCTGCTAAACATCAGCAGCACTTACTAAGGTTGGGGCGCAAGTGA 708 0.4802 MDVEEEQAIEICSLSIPEQVSDDDQKGIKCTTSSCIMLSDNEGFCAICLEKIALQETALVKGCEHAYCVTCILRWATYHQNPSCPQCKHPFQFLNVHRSLNGSIHDYMFEESVCLLLRATWFMPLTVEAQEEQYDEDIYQYEDDDGDLDEVYLSSSSSLRIGNRRWGDNGYVRAGRKEARPINRENFQDPDAGPSHGPRKKDATGRRAKRAMKREAADKAAAAKHQQHLLRLGRK* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00532 235 ProSitePatterns Zinc finger RING-type signature. 63 72 IPR017907 -
Eupl01g00532 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 145 IPR013083 -
Eupl01g00532 235 Pfam Ring finger domain 45 88 IPR001841 -
Eupl01g00532 235 ProSiteProfiles Zinc finger RING-type profile. 45 88 IPR001841 -
Eupl01g00532 235 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 22 235 - -
Eupl01g00532 235 SMART ring_2 45 87 IPR001841 -
Eupl01g00532 235 MobiDBLite consensus disorder prediction 208 225 - -
Eupl01g00532 235 MobiDBLite consensus disorder prediction 177 235 - -
Eupl01g00532 235 SUPERFAMILY RING/U-box 38 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00532 Eupl-Chr1 20769993 20784090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00532 38 235 C3H Transcription Factor Family AT5G19430 56.221 2.80e-75 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00532 - - ming:122062012 280.796