Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00523 ATGGACGTAGAGGAGGAGCAAGCGATTGAAATTTGCAGTCTTTCCATCCCAGAACAGGTCTGTGATGATGATCGGAAGGGGATCAAGTGTACGACCTCTTCTTGCGTAATGCTGTCCGACAATGAGGGGTTCTGCGCGATTTGCTTGGAGAAGATAGCTCTTCAGGAGACTGCTCTCGTAAAAGGTTGCGAGCATGCTTACTGTGTGACTTGCATCCTAAGGTGGGCCACATACCATCAGAATCCTTCTTGTCCCCAGTGCAAGCATCCATTTCAGTTTCTGAATGTTCATCGTTCGCTCAATGGCAGCATCCATGACTACATGTTCGAGGAGAGTGTTTGCCTACTTCTTAGAGCCACATGGTTCATGCCTTTGACAGTGGAGGCGCAGGAAGAGCAGTATGATGAAGATATTTATCAATACGAGGACGATGATGACGACCTAGATGAAGTTTATTTAAGCAGTTCATCGAGTCGTCGTATTGGTAACCGGAGGTGGGGTGATAATGGTTATGTTAGGGCAGGGCGTAAAGAAGCGAGGCCCATCAATCGAGAAAATTTCCAAGATCCTGATGCTGGTCCATCTCATGGTCCTAGAAAGAAAGATGCAACTGGACGACGGGCAAAGAGGGCGTTGAAGCGTGAGGCTGCAGATAAGGCTGCTGCTGCTAAACATCAGCAGCACTTACTAAGGTTGGGGCGCAAGTGA 708 0.4831 MDVEEEQAIEICSLSIPEQVCDDDRKGIKCTTSSCVMLSDNEGFCAICLEKIALQETALVKGCEHAYCVTCILRWATYHQNPSCPQCKHPFQFLNVHRSLNGSIHDYMFEESVCLLLRATWFMPLTVEAQEEQYDEDIYQYEDDDDDLDEVYLSSSSSRRIGNRRWGDNGYVRAGRKEARPINRENFQDPDAGPSHGPRKKDATGRRAKRALKREAADKAAAAKHQQHLLRLGRK* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00523 235 ProSitePatterns Zinc finger RING-type signature. 63 72 IPR017907 -
Eupl01g00523 235 MobiDBLite consensus disorder prediction 175 235 - -
Eupl01g00523 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 156 IPR013083 -
Eupl01g00523 235 ProSiteProfiles Zinc finger RING-type profile. 45 88 IPR001841 -
Eupl01g00523 235 Pfam Ring finger domain 45 88 IPR001841 -
Eupl01g00523 235 SUPERFAMILY RING/U-box 41 94 - -
Eupl01g00523 235 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 26 235 - -
Eupl01g00523 235 SMART ring_2 45 87 IPR001841 -
Eupl01g00523 235 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00523 Eupl-Chr1 20625107 20639218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00523 38 235 C3H Transcription Factor Family AT5G19430 55.760 1.22e-73 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00523 - - ming:122062012 268.855