Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00512 ATGTCTCGGACGGAGAGGATGACGTCAGATCCTACCAGGACGGGCCCCGTTGAAAGGGACATTGAGCAGGCCATTACTGCTCTTAAGAAAGGAGCATATTTGCTCAAGTATGGACGTAGAGGGAAGCCCAAGTTTTGTCCCTTCAGGCTGGCAAATGATGAATCTGGTTTAATATGGTTCTCAGGGAAAGAGAAGAAACACCTTAAACTAAGCCATGTATCCAGAATTATACCTGGGCAGCGCACTGCAATTTTTCAGAGGTATCCTCGGCCCGAGAAGGAATACCAATCATTTTCCCTTATATATAATGATAGGTCACTGGATTTGATTTGCAAGGATAAAGATGAAGCTGAAGTTTGGTTTGTTGGTCTAAAAGCATTAATTTCACGCGGCCATCACCGGAAATGGAGAACAGAATCAAGAAGCGATGGAGTTTCATCTGAAGCAAATAGTCCAAGAACATACACCCGAAGAAGTTCTCCTTTGAGTTCTCCATTTGGTAGCGGCGATAGCTTGCAAAAGGATGGCGGAGATCCCCTTCGTCTTCATAGTCCATATGAAAGCCCCCCTAAGAATGGACTGGATAAGGCATTGATATTATATGCTGTACCTCCCAAGGGTTTCTTCCCCTCAGAATCTGCTAGTGGCTCAGTCCATTCTCTGTCATCAGGAGGCTCAGATAGCATGAATGGGCACATGAGAAGCATGACAATGGATGCTTTTAGAGTAAGTCTATCAAGTGCCGTCAGCTCATCAAGTCAAGGTTCTGGTCATGATGATGGTGATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGCACTGGGGATGGTGTTATGGGTGGTGGCACTCATAGAGTTGGAAGTTCTTCCGGTGTTAAAATGGATTCACTTTTGCCCAAAGCCTTGGAATCTGCAGTTGTACTCGATGTTCAGAATTTAGCTTGTGGTGGACGACATGCTGTTTTAGTAACCAAGCAAGGAGAGATTTTCTCTTGGGGGGAGGAATCAGGAGGTAGACTTGGGCATGGTGTAGATTCTGATGTGTCACACCCAAAGCTTATTGATGCTCTTGGGAATACGAACATTGAACTTGTAGCATGTGGGGAATACCATACCTGTGCTGTAACACTCTCTGGAGATCTGTACACATGGGGTGATGGCACTTACAACTTTGGTCTCCTTGGACATGGAAATGAAGTGAGTCACTGGGTCCCAAAAAGGGTAAATGGGCCTTTGGAGGGTATACATGCATCGTCCATTTCCTGTGGACCTTGGCATACAGCTGTTGTAACGTCTGCTGGGCAATTGTTTACTTTTGGTGATGGAACTTTTGGGGTTCTGGGCCATGGAGATCGGAGGAGTGTGTCAATACCCAGGGAAGTAGAATCTCTCAAGGGTCTCCGTACTGTGCGAGCAGCTTGTGGTGTTTGGCACACTGCTGCAGTTGTAGAAGTCATGGTTGGGACTTCAAGTTCCAGCAACTGCTCTTCGGGGAAGCTGTTTACGTGGGGAGATGGAGATAAAGGTCGACTTGGGCATGGTGATAAGGAACCAAAACTTGTGCCTACTTGTGTTGCAGCTCTAGTTGAGCCAAACTTTTGTCAAGTTGCCTGCGGACACAGCCTGACAGTTGCACTTACAACCTCAGGCCATGTCTACACAATGGGCAGTCCTGTTTATGGTCAGCTAGGGAATCCTCTGGCTGATGGTAAGCTTCCCAACCGTGTCGAAGGAAAGCTCTTAAAGAATTTTGTGGAGGAAATAGCTTGTGGTGCATATCATGTTGCGGTTTTAACTTCAAGAACTGAAGTTTACACTTGGGGCAAGGGAGCAAATGGTCGGTTAGGTCATGGGGATACAGATGATAAAAATTCTCCATCCTTAGTTGAAGCTTTGAAAGACAATCAAGTCAAAAGTATTGCTTGTGGTACAAATTTTACTGCAGCCATCTGTCTTCATAAGTGGGTATCTGGTGTTGATCAATCTATGTGTTCTGGCTGCCGCCTGCCGTTTAACTTCAAAAGAAAAAGGCATAATTGCTATAATTGTGGGCTTGTCTTTTGTCATTCATGCAGCAGTAAAAAGTCTCTTAAGGCTTCTATGGCACCGAATCCGAACAAACCTTATCGTGTCTGTGATAACTGTTTCAATAAACTAATGAAATCCATTGAGACTAATTCTACATCTCACTTGACTAGAAGAGGAAGTATGAATGAGAGTCTAAATGAGCTGGTTGAAAAGGATGAAAAGTTGGATTCCAGATCTCAGGTGCAACTTCCTAGATTTTCTTCAATGGAATCCTTTAAGCAAGTGGAAAGCAAATCTTCCAAGAGGAACAAGAAATTAGAATTTAATAGCAGCCGTGTCTCACCTATTCCAAGTGGAAGCTCTCAATGGGGAGCACTTAACATCTCTAAATCTTTTAATCCAGTATTTGGGTCATCCAAAAAGTTCTTCTCAGCTTCTGTTCCCGGATCGAGAATCGTTTCTCGAGCAACGTCACCAATATCAAGACGGCCCAGTCCACCTCGCTCCACAACACCGACACCAACCCTGTCAGGACTTACTTCCCCAAAAATTGTTGTGGACGATTCTAAAAGGACGAATGATAGCCTGAGCCAAGAGGTTCTTCAATTAAGATCACAGGTGGAAAATCTCACTCGTAAAGCTCAACATCAAGAAGTTGAGCTGGAACGAACGACCAAACAGCTGAAGGAGGCAATAGCAATTGCAGGGGAAGAGACTGCAAAATGCAAAGCAGCAAAGGAAGTGATTAAGTCGCTGACTGCCCAATTGAAGGAAATGGCTGAAAGGATACCAGTGGGAGCAGTGCGGAACAGCAAACCACCTTCCTTTGCTTCCTTTAGTTCCAGTCCTGCTTCCAGCGATGTTTCTTCTGCAGTCATTGACCGACTGAGCAGTCCATTCACTTCCCATGAACCGGATTTAAATGGATCAAACAACCTGGTGCTTTCCAATGGACCAAGTGCCATTGGTAACCGTAATTCAAGTCACAACAGACTCAGCCATTCCGATGCAACAACTAGGAATGGGAGCAGGATGACAGAAGGGGTACCCAATCATGAGGCTGAATGGGTTGAGCAAGATGAGCCTGGTGTTTATATTACACTTACATCATTACCTGGCGGTGTTAAGGATCTCAAGCGAGTCCGCTTCAGTCGGAAGCGGTTTAGCGAGAAACAAGCAGAACAGTGGTGGGCAGAGAATCGGGCAAGGGTATATGAGCAGTACAATGTGCGCATGGCTGACAAGTCTAGCATCCATGTTGGGAGTGAGGATTTGGCTCATTGA 3312 0.4538 MSRTERMTSDPTRTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLANDESGLIWFSGKEKKHLKLSHVSRIIPGQRTAIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFVGLKALISRGHHRKWRTESRSDGVSSEANSPRTYTRRSSPLSSPFGSGDSLQKDGGDPLRLHSPYESPPKNGLDKALILYAVPPKGFFPSESASGSVHSLSSGGSDSMNGHMRSMTMDAFRVSLSSAVSSSSQGSGHDDGDALGDVFIWGEGTGDGVMGGGTHRVGSSSGVKMDSLLPKALESAVVLDVQNLACGGRHAVLVTKQGEIFSWGEESGGRLGHGVDSDVSHPKLIDALGNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNFGLLGHGNEVSHWVPKRVNGPLEGIHASSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRRSVSIPREVESLKGLRTVRAACGVWHTAAVVEVMVGTSSSSNCSSGKLFTWGDGDKGRLGHGDKEPKLVPTCVAALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPLADGKLPNRVEGKLLKNFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDKNSPSLVEALKDNQVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRLPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFNKLMKSIETNSTSHLTRRGSMNESLNELVEKDEKLDSRSQVQLPRFSSMESFKQVESKSSKRNKKLEFNSSRVSPIPSGSSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLSGLTSPKIVVDDSKRTNDSLSQEVLQLRSQVENLTRKAQHQEVELERTTKQLKEAIAIAGEETAKCKAAKEVIKSLTAQLKEMAERIPVGAVRNSKPPSFASFSSSPASSDVSSAVIDRLSSPFTSHEPDLNGSNNLVLSNGPSAIGNRNSSHNRLSHSDATTRNGSRMTEGVPNHEAEWVEQDEPGVYITLTSLPGGVKDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMADKSSIHVGSEDLAH* 1104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00512 1103 ProSiteProfiles BRX domain profile. 1030 1085 IPR013591 -
Eupl01g00512 1103 Pfam Transcription factor BRX N-terminal domain 913 949 IPR027988 -
Eupl01g00512 1103 MobiDBLite consensus disorder prediction 143 170 - -
Eupl01g00512 1103 Coils Coil 918 938 - -
Eupl01g00512 1103 SMART fyve_4 652 721 IPR000306 GO:0046872
Eupl01g00512 1103 MobiDBLite consensus disorder prediction 768 796 - -
Eupl01g00512 1103 MobiDBLite consensus disorder prediction 830 857 - -
Eupl01g00512 1103 PRINTS Chromosome condensation regulator RCC1 signature 420 436 IPR000408 -
Eupl01g00512 1103 PRINTS Chromosome condensation regulator RCC1 signature 310 323 IPR000408 -
Eupl01g00512 1103 PRINTS Chromosome condensation regulator RCC1 signature 379 395 IPR000408 -
Eupl01g00512 1103 PRINTS Chromosome condensation regulator RCC1 signature 597 618 IPR000408 -
Eupl01g00512 1103 PRINTS Chromosome condensation regulator RCC1 signature 539 557 IPR000408 -
Eupl01g00512 1103 PRINTS Chromosome condensation regulator RCC1 signature 329 345 IPR000408 -
Eupl01g00512 1103 PRINTS Chromosome condensation regulator RCC1 signature 436 450 IPR000408 -
Eupl01g00512 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 550 601 IPR000408 -
Eupl01g00512 1103 SUPERFAMILY PH domain-like 20 128 - -
Eupl01g00512 1103 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 658 720 IPR017455 -
Eupl01g00512 1103 MobiDBLite consensus disorder prediction 975 1023 - -
Eupl01g00512 1103 MobiDBLite consensus disorder prediction 137 189 - -
Eupl01g00512 1103 FunFam PH, RCC1 and FYVE domains-containing protein 1 236 487 - -
Eupl01g00512 1103 Pfam Transcription factor regulating root and shoot growth via Pin3 1029 1084 IPR013591 -
Eupl01g00512 1103 Gene3D - 20 136 IPR011993 -
Eupl01g00512 1103 Pfam Unstructured region between BRX_N and BRX domain 954 1022 - -
Eupl01g00512 1103 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 472 482 IPR000408 -
Eupl01g00512 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 327 378 IPR000408 -
Eupl01g00512 1103 Coils Coil 862 910 - -
Eupl01g00512 1103 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 64 933 - -
Eupl01g00512 1103 CDD PH_PLC_plant-like 19 129 - -
Eupl01g00512 1103 MobiDBLite consensus disorder prediction 212 232 - -
Eupl01g00512 1103 FunFam Putative E3 ubiquitin-protein ligase HERC1 660 728 - -
Eupl01g00512 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 434 485 IPR000408 -
Eupl01g00512 1103 MobiDBLite consensus disorder prediction 975 1022 - -
Eupl01g00512 1103 SUPERFAMILY RCC1/BLIP-II 265 655 IPR009091 -
Eupl01g00512 1103 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 313 323 IPR000408 -
Eupl01g00512 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 602 653 IPR000408 -
Eupl01g00512 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 379 433 IPR000408 -
Eupl01g00512 1103 MobiDBLite consensus disorder prediction 213 232 - -
Eupl01g00512 1103 FunFam PH, RCC1 and FYVE domains-containing protein 1 488 659 - -
Eupl01g00512 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 326 IPR000408 -
Eupl01g00512 1103 SUPERFAMILY FYVE/PHD zinc finger 654 726 IPR011011 -
Eupl01g00512 1103 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 498 549 IPR000408 -
Eupl01g00512 1103 Gene3D - 495 665 IPR009091 -
Eupl01g00512 1103 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 420 430 IPR000408 -
Eupl01g00512 1103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 726 IPR013083 -
Eupl01g00512 1103 Gene3D - 389 493 IPR009091 -
Eupl01g00512 1103 Gene3D - 213 388 IPR009091 -
Eupl01g00512 1103 Pfam FYVE zinc finger 654 720 IPR000306 GO:0046872
Eupl01g00512 1103 CDD FYVE_like_SF 663 716 - -
Eupl01g00512 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 327 375 IPR000408 -
Eupl01g00512 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 378 430 IPR000408 -
Eupl01g00512 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 549 598 IPR000408 -
Eupl01g00512 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 434 482 IPR000408 -
Eupl01g00512 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 603 650 IPR000408 -
Eupl01g00512 1103 Pfam Regulator of chromosome condensation (RCC1) repeat 497 546 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00512 Eupl-Chr1 20232585 20281768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00512 922 1096 Major Intrinsic Protein MIP AT1G31880 32.447 1.17e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00512 - - nnu:104611308 1865.12