Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00505 ATGCCAGGCTCTCCAACGGAGGAGACCCTTAACCAGCACAAGCTCTGTGGTTTTTTCTGCGCTGTTCTTTCCGTGAATTCACCGCAAAACGAGAACGATATCTCCAAAACCCTAGCTTTCGGCACTCGCTGTTACCTCTTCGGCAATGGCTCCGACGAGGTGGGGTTTCGCTCCGAAGACGGCGTCTTCGTGCTGTCGCCGATTCAAGGTGGCAGTAATTCGGCTTCGGAAGAGAATCCGGAAGTGAATTCTGGGGATTTGAGTTCGGATTTGGGGAGAAGCAAGGATTTGGGGAGCGAATGTAGTTCTTCGAGGAAGAAAAGGGGAAGAATTGGGCTTGTGCACGGGAGGATGAGCGTGGTCCATCAACTTCATGTGTCGATGGTGCAGAAGTGTTTGGAGATTATCGCTAGAGTGGTTAGGGTTTCGGTTCGTGGAGTCGGGAATGCCAGGGCTGTCGTGCTGATCGATGTGTATTTGCCACTTGCCTTGTGGTCGGGTTGGCAATTCCCCAAATCAGGGTCAACCGCTGCTTCTCTGTTTAGGCATTTGAGTTGTGACTGGGAGCATAGAAATTTGGTGCTTGCTGGCAATGGAAATCATTGTAAACTTACTCATGAAGACGACGAGAGCATTTGGAACCATTCTGATTGTCATGTTCTTGGATGTAAAGTGCATTGCAATTTATCTGGATCTTCTAAGAAGAGGCTATTCGAGCTTCATGAAATTTTTAAGAGTTTACCTGGTGTTGCGAAGGAGGGAAAGGTTTATTCGACAAGAGTAAATCCAGCGGATACCTCTCTTAGTTCTGGAATTTGGGAGGTCTCAGATGATGTGTTGACTAATGTTCTAACTGCACTTGGCCCAAAAGACCTTGTTAGAGTTGCAGCCACTTGTCGCCATTTAAGGTCCCTGGCTCTATCTATCATGCCGTGTATGAAGCTCAAGCTTTTTCCTCATCAGCAGGCAGCAGTTGAATGGATGTTACAACGCGAGCGCAATGCTGAAATCTTGGCTCATCCTCTTTATATGGATTTCTCAACTGAGGATGGATTCCATTTTTATATAAATGCTGTTTCTGGTGAAATAGCGACTGGGATAGCTCCCACTGTTACAGACTTTCATGGGGGAATGTTTTGTGATGAGCCAGGTTTAGGGAAGACTATAACTGCTCTTTCTCTCATTCTGAAGACACAAGGAACATTGGCAGATCCACCAGATGGAGTAGAAGTGATGTGGTGTACGCACAATCATGATCAAAGATGTGGCTACTATGAGCTTAGTGCTAATAATTTTTCCCCTGGTAATTTCATGTCTTCGTGGAAAAGATTCATGGGTCAGAATGTGCGAAGGGGACAAATTTGTCAAGATAAGTTTACTCATGTTGAAAACTCAAAACCCTCTTCGTCAAAAAGAGTAAAATTAATAGGTTCTGATGAAGTATATATGAAGTTTGCTGATTCTTGTCCCAGTAAGTTGGGAATTATGTCGTCCACAGCTACACCCTCTTTGCCAGCAACACGTGTACTTCGATGCACAAGAAGCTTGAGTCGGGTTAAGAGAAATCTTCTTGATACATATGAAGGAGCTTCTGGCCTTGCAAAAAGAAGAAAGGTTAGAAAAAATGCTATTGACAGGAGACATATTTCAAATGGCCCGAGACATGTCTCTCTGGAAGAGGAAGTCAGTACTTCATCCAGATTGCCAAATAGTTGCAAGAAGCCTACGAAGGCTAGTGCTGATTGTTCAGAATATAATGAAACTTGGGTTCAGTGCGATGCTTGTCGCAAATGGCGAAAGCTTTCTGACACAAGTTTACCAGATGCTACTGCAGCATGGTTTTGTAGTATGAACAGTGATCCATTACATCAGAATTGTGCAATTCCAGAGGAATCTTGGGACTACAAGCGGTCCATAACATACTTACCGGGCTTTTGCACTAAAGGAACCCCAGGGGGGATGGAGGAAAATGTGTCGTTTTTCATAAGTGTGCTTAAAGAACACTATACATTGATAAATTCTGAAACAAAGAAGGCTTTAACCTGGCTGGCTAAATTATCGCAAGGCAGGCTCCTAGAAATGGAAACAATTGGCTTGACGCGTCCTGTCTTGAACACACACATTGTTTCTGTTGGAGATACCCATGGATACCATAAAATATTTCAAGCATTTGGTCTGATAAGGAGGGTTGAAAGGGGTACTAGTCGATGGTATTACCCCCACACCCTTGACAATTTGGCCTTTGATGTGGTTGCACTTCAAATTGCTCTCACTAAGCCATTAGACTTGTTCAGGTTATATATGTCCAGAGCAACTCTTGTTGTTGTCCCAGCAAATCTAGTTGATCACTGGAAGACCCAAATCAGGAAGCATGTAAGACCTGGCCAGCTGCGTGTTTATATTTGGACTGATCACAGAAAGCCCTCAGCCCATAATCTGGCATGGGACTATGATGTTGTCATAACTACCTTTAATCGTTTAAGTGCAGAATGGGGCCCCCGTAAGAGGAGTGTATTGATGCAAGTGCACTGGCTTAGGGTGATGTTAGATGAAGGACACACTCTTGGTTCAAGTCTTAACTTGACAAACAAATTGCAAATGGCCATCTCATTGACAGCTTCAAATCGGTGGCTATTAACTGGGACACCAACTCCAAACACACCCAACAGCCAAGTTTCCCATCTTCAAACCATGTTTAAGTTTCTTCATGAAGAAGCCTATGGACAGAATCAGAAATCATGGGAGGCTGGCATTCTTAGGCCATTTGAGGCTGAGATGGAGGAAGGCCGGTTACGTCTATTGCAGCTACTTCGGAGGTGCATGATTAGTGCCAGAAAAATAGATCTGCAAACTATTCCTCCTTGCATCAAGAAAGTGACTTTTCTCAGTTTCACAGAAGAACATGCAAGGAGTTACAATGAATTGGTTGTTACTGTTCGGCGCAATATTTTAATGGCTGATTGGAATGATCCTTCACATGTCGAGAGTCTCCTGAACCCTAAACAGTGGAAATTCCGAAGTACCACAATTAGAAATGTCAGGTTATCTTGCTGTGTGGCTGGACATATTAAAGTAACAGATGCGGGTCAGGATATTCAGGAAACAATGGATATTTTAGTGGAACAAGGTCTGGATCCTGTTTCAGAAGAGTATGTTTTCATAAAACTTGCACTCCTGGATGGCGGTAACTGTCTCAGGTGCAAAGAATGGTGCCGTCTACCTGTCATTACACCATGTAGACATCTTCTATGTCTTGATTGTGTTGCTCTGGACAGTGAGAAATGTACTTTTCCTGGCTGTGGGAACTCCTATGAGATGCAGAGTCCTGAAATATTAACTCGGCCAGAAAATCCTAATCCAAAGTGGCCTGTTCCCAAGGATCTTATTGAGTTACAACCTTCATATAAACAGGATAATTGGGATCCTGATTGGCATGCAACATCGAGCAGCAAAGTTGCATATCTGGTAGAAAGGTTGAAAGCTTTGCGGGAGGCTAATAGAAAGATGGGTTACTCTGTAGATGAAAATGATGATGCCAAGTCCTGTGGTGAGCTTCTTTTGCCCTCCGAGAAAGGCCACTGGAATGTGTTACTATACCACAAGGCTTGCACCAATACAATTGATGAGTCTTATAAGATACTCCCTGAGAAAGTGATAATATTTTCTCAGTTTCTTGAGCATATACACGTCATTGAACAGCAGTTAACAGGCGCGGGTATCAAATTTGCTGGAATGTATAGTCCAATGCATTCTAGCAACAAGATGAAGTCACTGGCGATATTCCAGCATGATGAAAACTGTATGGCTCTTTTGATGGATGGAAGTGCTGCTTTGGGCCTTGATTTGAGCTTTGTCACGCATGTCTTTCTGATGGAACCTATCTGGGACAGAAGCGTGGAGGAACAAGTAATTAGTCGTGCTCATCGGATGGGTGCTACTCGTCCTGTTAACGTGGAAACTTTGGCAATGCGTGGTACCATTGAAGAGCAAATGTTGGAGTTCTTACAGGATGGTGATAAGTGTAGAAGAACCTTGAAGGAAGAGTTTGGAAGGATTGACCGGGAAGGAGCAAGAACACATCGTACTTTGCATGATTTTGCTGAAAGCAATTATTTGGCTCAACTTAGCTTTGTACGGACGAATGCTAAGGCGTGA 4155 0.4378 MPGSPTEETLNQHKLCGFFCAVLSVNSPQNENDISKTLAFGTRCYLFGNGSDEVGFRSEDGVFVLSPIQGGSNSASEENPEVNSGDLSSDLGRSKDLGSECSSSRKKRGRIGLVHGRMSVVHQLHVSMVQKCLEIIARVVRVSVRGVGNARAVVLIDVYLPLALWSGWQFPKSGSTAASLFRHLSCDWEHRNLVLAGNGNHCKLTHEDDESIWNHSDCHVLGCKVHCNLSGSSKKRLFELHEIFKSLPGVAKEGKVYSTRVNPADTSLSSGIWEVSDDVLTNVLTALGPKDLVRVAATCRHLRSLALSIMPCMKLKLFPHQQAAVEWMLQRERNAEILAHPLYMDFSTEDGFHFYINAVSGEIATGIAPTVTDFHGGMFCDEPGLGKTITALSLILKTQGTLADPPDGVEVMWCTHNHDQRCGYYELSANNFSPGNFMSSWKRFMGQNVRRGQICQDKFTHVENSKPSSSKRVKLIGSDEVYMKFADSCPSKLGIMSSTATPSLPATRVLRCTRSLSRVKRNLLDTYEGASGLAKRRKVRKNAIDRRHISNGPRHVSLEEEVSTSSRLPNSCKKPTKASADCSEYNETWVQCDACRKWRKLSDTSLPDATAAWFCSMNSDPLHQNCAIPEESWDYKRSITYLPGFCTKGTPGGMEENVSFFISVLKEHYTLINSETKKALTWLAKLSQGRLLEMETIGLTRPVLNTHIVSVGDTHGYHKIFQAFGLIRRVERGTSRWYYPHTLDNLAFDVVALQIALTKPLDLFRLYMSRATLVVVPANLVDHWKTQIRKHVRPGQLRVYIWTDHRKPSAHNLAWDYDVVITTFNRLSAEWGPRKRSVLMQVHWLRVMLDEGHTLGSSLNLTNKLQMAISLTASNRWLLTGTPTPNTPNSQVSHLQTMFKFLHEEAYGQNQKSWEAGILRPFEAEMEEGRLRLLQLLRRCMISARKIDLQTIPPCIKKVTFLSFTEEHARSYNELVVTVRRNILMADWNDPSHVESLLNPKQWKFRSTTIRNVRLSCCVAGHIKVTDAGQDIQETMDILVEQGLDPVSEEYVFIKLALLDGGNCLRCKEWCRLPVITPCRHLLCLDCVALDSEKCTFPGCGNSYEMQSPEILTRPENPNPKWPVPKDLIELQPSYKQDNWDPDWHATSSSKVAYLVERLKALREANRKMGYSVDENDDAKSCGELLLPSEKGHWNVLLYHKACTNTIDESYKILPEKVIIFSQFLEHIHVIEQQLTGAGIKFAGMYSPMHSSNKMKSLAIFQHDENCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSVEEQVISRAHRMGATRPVNVETLAMRGTIEEQMLEFLQDGDKCRRTLKEEFGRIDREGARTHRTLHDFAESNYLAQLSFVRTNAKA* 1385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00505 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 764 938 IPR027417 -
Eupl01g00505 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 843 1337 IPR027417 -
Eupl01g00505 1384 MobiDBLite consensus disorder prediction 547 570 - -
Eupl01g00505 1384 Pfam Helicase conserved C-terminal domain 1215 1311 IPR001650 -
Eupl01g00505 1384 ProSitePatterns Zinc finger RING-type signature. 1079 1088 IPR017907 -
Eupl01g00505 1384 SMART helicmild6 1229 1311 IPR001650 -
Eupl01g00505 1384 Gene3D - 751 945 IPR038718 -
Eupl01g00505 1384 MobiDBLite consensus disorder prediction 71 98 - -
Eupl01g00505 1384 Gene3D - 585 635 - -
Eupl01g00505 1384 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1206 1349 IPR001650 -
Eupl01g00505 1384 CDD DEXDc_SHPRH-like 758 923 - -
Eupl01g00505 1384 CDD SF2_C_SNF 1216 1321 - -
Eupl01g00505 1384 Pfam SNF2-related domain 320 987 IPR000330 GO:0005524|GO:0140658
Eupl01g00505 1384 CDD F-box_SF 277 306 - -
Eupl01g00505 1384 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 89 1345 - -
Eupl01g00505 1384 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 308 398 IPR027417 -
Eupl01g00505 1384 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 750 901 IPR014001 -
Eupl01g00505 1384 SMART ultradead3 313 912 IPR014001 -
Eupl01g00505 1384 MobiDBLite consensus disorder prediction 71 104 - -
Eupl01g00505 1384 Gene3D - 1106 1370 IPR027417 -
Eupl01g00505 1384 Pfam CW-type Zinc Finger 588 631 IPR011124 GO:0008270
Eupl01g00505 1384 ProSiteProfiles Zinc finger CW-type profile. 583 634 IPR011124 GO:0008270
Eupl01g00505 1384 SUPERFAMILY F-box domain 272 308 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00505 Eupl-Chr1 20053425 20074034 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00505 316 396 RAD5 or RAD16-like Gene Family AT5G22750 30.682 5.60e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl01g00505 SNF2_N 5.2e-98 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00505 - - nnu:104606027 2183.68