Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl01g00494 | ATGGCATCTGGGAATACTTGTTTTGATGACATGCGGTCAAAGCCTGAGGTTATTGATCCTCCCCAAAATGGAGACAAGCTGGAAGTCGGTGAACATGTGAATGATCCTGCTCAACATGCTCTAAAACCTAATGTGACTGTTGCTAGCAGCGTCCGTGAACTTCTGGAGTGTCCTGTATGCTTAAATGCTATGTACCCTCCTATCCATCAGTGTTCAAATGGCCACACTTTGTGTTCTGGTTGCAAGCCAAGGGTGCACAATCGGTGCCCCACTTGCAGGCACGAGCTTGGCAACATTCGATGCCTTGCATTGGAGAAGGTTGCGGCCTCTCTTGAGCTTCCGTGCAAATATCAGAGTTTTGGATGTGTGGGCATATATCCTTACTACAGCAAGCTCAAACATGAATCCCAGTGTATGTTTAGACCCTACAACTGTCCCTATGCTGGTTCCGAGTGCACTGTCATCGGAGATATCCCTTTTCTGGTGGCCCACCTGAAGGATGACCACAAAGTTGACATGCACAGTGGCAGCACTTTCAACCATCGCTATGTCAAATCAAATCCGCATGAGGTTGAGAATGCCACGTGGATGCTAACGGTTTTCAGTTGCTTTGGACAGTACTTCTGTCTTCATTTTGAGGCCTTTCAGCTTGGGATGGCTCCTGTGTATATAGCGTTCTTGCGGTTTATGGGTGACGACAACGAGGCCAAGAACTACAGCTACAGTCTTGAGGTGGGGGCGAATGGGAGGAAGATGGTGTGGCAAGGGGTGCCCAGAAGCATAAGAGACAGCCATAGGAAGGTGCGCGACAGTTTCGATGGGCTCGTCATTCAGCGGAGCATGGCTCTCTTCTTCTCAGGTGGAGATAGGAAGGAGTTGAAATTGAGGGTGACTGGGAGGATTTGGAAAGAACAGTGA | 918 | 0.4902 | MASGNTCFDDMRSKPEVIDPPQNGDKLEVGEHVNDPAQHALKPNVTVASSVRELLECPVCLNAMYPPIHQCSNGHTLCSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQSFGCVGIYPYYSKLKHESQCMFRPYNCPYAGSECTVIGDIPFLVAHLKDDHKVDMHSGSTFNHRYVKSNPHEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGANGRKMVWQGVPRSIRDSHRKVRDSFDGLVIQRSMALFFSGGDRKELKLRVTGRIWKEQ* | 306 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl01g00494 | 305 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 40 | 304 | - | - | |
Eupl01g00494 | 305 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 15 | 108 | - | - | |
Eupl01g00494 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 164 | IPR013083 | - | |
Eupl01g00494 | 305 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 165 | 298 | IPR008974 | GO:0005515 | |
Eupl01g00494 | 305 | ProSiteProfiles | Zinc finger SIAH-type profile. | 110 | 170 | IPR013010 | GO:0008270 | |
Eupl01g00494 | 305 | SUPERFAMILY | TRAF domain-like | 110 | 302 | - | - | |
Eupl01g00494 | 305 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 166 | 298 | - | - | |
Eupl01g00494 | 305 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 109 | 165 | - | - | |
Eupl01g00494 | 305 | Pfam | Seven in absentia protein family | 99 | 298 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Eupl01g00494 | 305 | SUPERFAMILY | RING/U-box | 49 | 97 | - | - | |
Eupl01g00494 | 305 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Eupl01g00494 | 305 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 109 | IPR013083 | - | |
Eupl01g00494 | 305 | CDD | Sina | 171 | 299 | - | - | |
Eupl01g00494 | 305 | CDD | RING-HC_SIAHs | 55 | 93 | - | - | |
Eupl01g00494 | 305 | ProSiteProfiles | Zinc finger RING-type profile. | 57 | 93 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl01g00494 | Eupl-Chr1 | 19838935 | 19845640 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl01g00494 | 48 | 305 | C3H Transcription Factor Family | AT2G41980 | 79.457 | 6.72e-161 | 449 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl01g00494 | K04506 | - | nnu:104591049 | 617.846 |