Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00481 ATGGCCTTTTTCAGAAATTATACAAATGAGACAGACTCACACAATGTCCTGAATGAAAAAGGCCAGGACCATGGTGTTGAGAGAGTTCATAATTCAGTTGGAAATGAAGATGTAGATGCAAGTTCGAGTGAGAAGGATGTTGAATTGAAGATGGATGATCAGTACCCGAGTCAGGACGAACAGGATGATACCAATAGGCTACAAAATGAGACTGCTGGTGGGGACAGCATCGCGAGGAGAACACAGAACTTTCAGCCTTCCGGAAGGAGAGCGCCTTTGGTTGGAAAGTGGGGTTCCTCATTTTGGAAGGACTGTCAACCTATGTACCCTAGGGAAGGATCTGAATCTGGCCGGGACTCGAAGAACATGGATTCTGATTATAAAAGTGAGGAAGGATCTGAGGATAATTCCTCAGATGTGAGGGAAGATAGATTAGAATCAGTAGACTATGATGGGCAGAAAGAAACCGAAGACGTTCAAAGGTGCCAGTCTGATGTACCTGCAGATGAGATGTTGTCTGATGATTACTACGAGCAGGATGGAGAAGAGCAGAGTGATTCATTGCATTATAGAGAACTGAACCGACCTAGTGCTTCAAGTTCGAGGCCACTATCAAGGCCCGTTGCTGTCAACAATAACATGTCAAGGAGTTCAAAGGCTGCAAATGTCGATGAATATGATGATGATGATTACGAAGATGAAGATGGGGATGATGAGGAAGACGAAGATGACCCTGATGATGCAGATTTTGAGCCTGATTGTGGAGGCCTAAGCAGCCGCACCAGGAACAAGGATAAAGAGTGGAATATGGATGATTCTGATGGAGATGATGATAATGATTATGACCTTGGTATCTCAGATGAAAATGATGCAGATTATAGTGGCAAACCCCGGGGCAGAGTACGAGGTAAGGGTGGACGTAGTTTGAAGTCTATCAGAGAACATAAATCATTCTCTGCACATAATCGACAAAAAAGAGGGAAAACTTTTTTGGAAGAGGAAGATTCATCTGCAATTGACTCAGAAATTGACAGTGAAGAGGACTTCAAAGGTAGAACTAAGAGAAATACACATATCCGTAAGAACAGCAATGGTCGATCCACTATGTCTGCGAATATCATGGGGCGAAATGGCGAGGTTCGCACTTCCAGTAGGTCAGTGCGGAAGGTATCATATGTCGAAAGTGAAGAAAGTGAAGGAGTAGATGAAGGAAAGACAAAGAAGTGCCAAAAGGAGGACATTGAAGAGGATGATGCTGATTCCATTGAAAAGGTACTCTGGCACCAGCCAAAGGGCATGGCTGAAGATGCTTTAAAGCACAATAAATCAACACAGCCTTCTGTATTGAGCCACTTGTTAGACTCTGAACCAGAATGGAATGAGATGGAATTCTTCATAAAATGGAAGGGCCAGTCATATTTACACTGCCAGTGGAAATCATTTTCTGATCTCCAAAATCTTAGTGGCTTTAAGAAGGTTTTAAATTACACAAAAAGAGTTACGGAAGAGAGGAAATATAGAAAGAAACTTTCACGTGAGGAGGTTGAGGTTCACGATGTGAGCAAGGAAATGGAATTGGATCTTATCAAGCAGTATAGTCAGGTAGAAAGAATATTTGCTGATAGAATTAGCAAAGGTGGCTCAGATGATGTGACGCCAGAGTATCTAGTGAAGTGGCAAGGACTCTCATATGCTGAAGCGACATGGGAGCGGGACGTAGATATTACATTTGCTCAAGATGCAATTGATGAATACAAGGTTCGTGAAGCTGCAATGACTGTTCAAGGAAAGATGGTGGATTTCCAGCGCAAAAAAAGCAAAGCTAGTTTGCGAAAGCTTGATGAGCAGCCTGAATGGTTGAAAGGAGGAAAACTTCGCGATTATCAGCTCGAGGGCTTGAATTTTCTGGTTAACAGTTGGAGAAACGATACCAATGTGATTCTCGCTGATGAGATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCAATGCTAGGTTTTCTACAGAATGCTCAACAAATTCATGGGCCCTTTCTTGTTGTTGTACCATTATCTACTTTGTCAAACTGGGCGAAAGAATTTAGAAAGTGGCTTCCTGAAATGAATATTGTTGTGTATATTGGAAATCGTGCTAGTCGAGAGGTTTGTGAGCAATATGAATTTTACACAAACAAGAAAACTGGTAGGAGTATTAAATTTAATACTCTATTGACAACATATGAAGTAGTGTTGAAGGATAAGGCTGTATTCTCCAAGATCAGGTGGAACTATCTTATGGTTGATGAAGCACACAGGCTAAAGAATAGTGAAGCATCGCTGTATACAACACTTTCGGAATTTAACACCAAAAACAAGTTGCTTATCACTGGTACTCCATTGCAAAACAGTGTTGAAGAGCTATGGGCTTTGCTTCATTTCCTCGATCCTGAGAAGTTCAAGAGCAAGGATGATTTTGTAGAGAAATACAAGAATCTAAGCTCTTTCAATGAAATGGAGCTTGCTAATCTTCATAAAGAATTGAGGCCTCACATTCTCCGAAGAGTTATCAAGGATGTAGAGAAGTCTTTGCCTCCAAAAATTGAACGCATTCTTAGGGTTGAAATGTCCCCCCTTCAGAAGCAGTATTATAAGTGGATTTTGGAACGTAACTTTCAAGACTTGAACAAAGGAGTCCGTGGGAATCAGGTTTCACTTTTAAATATTGTTGTGGAGTTGAAGAAATGCTGTAATCATCCATTTCTATTTGAAAGTGCAGACCATGGTTATGGTGGGGACACAAACACTAATGATAGCAGTAAACTTGAGCGCATTATCTTAAGCAGTGGGAAGCTAGTAATACTTGACAAGTTGCTAATCAGATTGCGTGAGACGAATCATCGTGTTCTAATATTTTCTCAGATGGTCAGGCTGTTGGATATACTGGCAGAATATTTGTGTCTAAGAGGGTTCCAGTTTCAGAGGCTTGATGGAAGTACTAGGGCTGACCTGCGTCATCAGGCTATGGAGCATTTTAATGCACCTGGAAGTGATGATTTTTGTTTCCTTCTGTCAACTCGTGCTGGTGGGCTAGGCATTAATCTTGCCACGGCTGACACTGTTATAATATTTGATTCAGATTGGAATCCTCAAAACGACTTACAGGCAATGAGTAGAGCGCATAGAATTGGACAACAAGATGTTGTTAACATTTATCGGTTTGTTACAAGCAAAAGTGTAGAGGAAGATATCCTGGAGCGTGCTAAGAAAAAGATGGTTCTCGACCATTTGGTCATTCAGAAACTGAATGCAGAAGGTAGACTTGAGAAGAAAGAGACAAAAAAAGGGAACTCTTTGTTTGACAAAAATGAGCTCTCAGCAATCCTAAGGTTTGGAGCAGAGGAACTCTTTAAGGAAGAGAAAAATGATGAAGAAAGCAAGAAGAGACTTTTAAGTTTGGATATTGATGAGATTCTTGAGAGAGCAGAGAAGGTTGAATCAAAGGGAGCCGAAGGAGAGCAAGGAAATGAATTGCTTAGTGCTTTTAAGGTTGCCAGTTTCTGCAGTGCTGAAGATGATGGGACTTTCTGGAGTCGCTGGATTCAACCAGAAGCTGTAGCTCAAGCTGAAGAAGCTTTAGCTCCTCGTGCTGCAAGGAATAAAAAGAGCTATGCAGAGGCTAATCAACCTGAAAAAAGTACCAAAAGGAAAAATAGGGGACTTGAATCTCAAGATAGAGTTCAAAAGCGCCGGAAAGCGGATTATTCTGTCCATTCCCCGCCGATGATTGAGGGAGCAGCTGCTCAAGTGAGGGGTTGGTCTTATGGGAACTTATCGAAGAAAGATGCTTCTCTCTTTGCCCGTGCGGTTAAGAAGTTTGGGAACCAGAGCCAAATCAGCTTAATAGTTGCAGAGGTTGGAGGTGCAATTGAAGCAGCTCCTTCTCAGGCACAGACTGAGTTGTTTGATGCTTTGATTGATGGTTGCAGAGAAGCAGTTAAAGGAGGAAATCTGGACCCCAAGGGAACCCTATTGGATTTTTTTGGCGTCCCTGTAAAGGCACATGAGGTGCTAGATCGTGTGAAAGAACTTCAGCTCCTAGCAAAGCGCATTAGAAGATACCAAGATCCAGTCGCACAGTTCCGACTGTTAATGCACTTTAGGGGTCCACCATGGTCCAAAGGTTGTGGCTGGAATCAAGTTGATGATGCAAGGTTGCTTCTGGGAATACATTACCATGGATTCGGAAACTGGGAAAAGATAAGGTTAGACCCAAGGCTTGGTCTTACTCGAAAGATTGCTCCCGTTACACTTGCACAGCGTGAAACTTTTCTACCCCGTGCTCCTAACTTGGATCAACGTGCTTCTGCGCTTCTGCGGAAGGAATTTGCAGCTGTTGGTGGCAATAATTCAAAAACTAAAGTGGGTCGTAAAGCTCCCAAGAATGAAGGTGAAAACCTTCGGAAAACCTCAAATACTCGCTTTAAGGACACGGGGGGGAAATCTCCTAAACTTAATGTCCGGGCAAACAAAGACCCACTTCAGAAACGCCAGAGGGTTGAGCCCATAGTCAAAGAGGAGGGAGAAATGTCAGATACTGAGCTGTATCAGCAATTTAAGGAAGAAAAATGGATGGAGTGGTGTGCAGATGTCATGATTGACGAGGAGAAGACACTCAAGCGTCTGGAGAGGTTGCAGTATACCAGTGCAGATCTTCCAAAGGAAAAGGTGCTTTCCCGAATTCGGAATTATCTACAACTTCTTGGGAGAAAGATAGACCAAATTGTTCAGGAACATGAGGAATCATATAAACAATCTCGGATGACAATGCGACTGTGGAACTATGTCTCCACCTTTTCAAATTTGTCTGGGGAGAGACTTCATCAGATTTATTCGAAACTTAAACAAGAGCAGCAGCATGCTGAGGCAGGAGTGGGACCCTCCTCCCTTAACGGTTCTGCACCTGGTCCCATGGACAGAGACAGTGATCCTAATCAGTGCCCTCCATTCACCCACAATATCCAGAATCCTCCAAGAGGGTACCAGAAGTATACAGCCGCCTACCAACCTTCAGAATCATTTAACAGGGATCAGGAGACGGGGAAGTCGGAAGCATGGAAACGGAGGAGAAGAGCGGATGCAGATATGCAGTCCCAAATTCAGCCCCCATATCAACCACCTCTGAGCAACGGTAACCGGTTACATGAACCAAATTCTTCAGGGATTCTTGGGTGGGGCCCAGCAGACAATAGACGCATTGGTAGTGAGAGGCCAAATAGAATGCGGCAGACCCGTTAA 5271 0.4305 MAFFRNYTNETDSHNVLNEKGQDHGVERVHNSVGNEDVDASSSEKDVELKMDDQYPSQDEQDDTNRLQNETAGGDSIARRTQNFQPSGRRAPLVGKWGSSFWKDCQPMYPREGSESGRDSKNMDSDYKSEEGSEDNSSDVREDRLESVDYDGQKETEDVQRCQSDVPADEMLSDDYYEQDGEEQSDSLHYRELNRPSASSSRPLSRPVAVNNNMSRSSKAANVDEYDDDDYEDEDGDDEEDEDDPDDADFEPDCGGLSSRTRNKDKEWNMDDSDGDDDNDYDLGISDENDADYSGKPRGRVRGKGGRSLKSIREHKSFSAHNRQKRGKTFLEEEDSSAIDSEIDSEEDFKGRTKRNTHIRKNSNGRSTMSANIMGRNGEVRTSSRSVRKVSYVESEESEGVDEGKTKKCQKEDIEEDDADSIEKVLWHQPKGMAEDALKHNKSTQPSVLSHLLDSEPEWNEMEFFIKWKGQSYLHCQWKSFSDLQNLSGFKKVLNYTKRVTEERKYRKKLSREEVEVHDVSKEMELDLIKQYSQVERIFADRISKGGSDDVTPEYLVKWQGLSYAEATWERDVDITFAQDAIDEYKVREAAMTVQGKMVDFQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPEMNIVVYIGNRASREVCEQYEFYTNKKTGRSIKFNTLLTTYEVVLKDKAVFSKIRWNYLMVDEAHRLKNSEASLYTTLSEFNTKNKLLITGTPLQNSVEELWALLHFLDPEKFKSKDDFVEKYKNLSSFNEMELANLHKELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDTNTNDSSKLERIILSSGKLVILDKLLIRLRETNHRVLIFSQMVRLLDILAEYLCLRGFQFQRLDGSTRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQDVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKETKKGNSLFDKNELSAILRFGAEELFKEEKNDEESKKRLLSLDIDEILERAEKVESKGAEGEQGNELLSAFKVASFCSAEDDGTFWSRWIQPEAVAQAEEALAPRAARNKKSYAEANQPEKSTKRKNRGLESQDRVQKRRKADYSVHSPPMIEGAAAQVRGWSYGNLSKKDASLFARAVKKFGNQSQISLIVAEVGGAIEAAPSQAQTELFDALIDGCREAVKGGNLDPKGTLLDFFGVPVKAHEVLDRVKELQLLAKRIRRYQDPVAQFRLLMHFRGPPWSKGCGWNQVDDARLLLGIHYHGFGNWEKIRLDPRLGLTRKIAPVTLAQRETFLPRAPNLDQRASALLRKEFAAVGGNNSKTKVGRKAPKNEGENLRKTSNTRFKDTGGKSPKLNVRANKDPLQKRQRVEPIVKEEGEMSDTELYQQFKEEKWMEWCADVMIDEEKTLKRLERLQYTSADLPKEKVLSRIRNYLQLLGRKIDQIVQEHEESYKQSRMTMRLWNYVSTFSNLSGERLHQIYSKLKQEQQHAEAGVGPSSLNGSAPGPMDRDSDPNQCPPFTHNIQNPPRGYQKYTAAYQPSESFNRDQETGKSEAWKRRRRADADMQSQIQPPYQPPLSNGNRLHEPNSSGILGWGPADNRRIGSERPNRMRQTR* 1757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00481 1756 ProSiteProfiles Chromo and chromo shadow domain profile. 533 597 IPR000953 -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 1 15 - -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 1460 1498 - -
Eupl01g00481 1756 Pfam Helicase conserved C-terminal domain 942 1055 IPR001650 -
Eupl01g00481 1756 SUPERFAMILY Chromo domain-like 416 500 IPR016197 -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 1216 1247 - -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 16 66 - -
Eupl01g00481 1756 Pfam Chromo (CHRromatin Organisation MOdifier) domain 534 586 IPR023780 -
Eupl01g00481 1756 SMART ultradead3 621 821 IPR014001 -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 393 415 - -
Eupl01g00481 1756 Gene3D - 408 533 - -
Eupl01g00481 1756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 611 846 IPR027417 -
Eupl01g00481 1756 CDD SF2_C_SNF 931 1066 - -
Eupl01g00481 1756 ProSiteProfiles Chromo and chromo shadow domain profile. 420 508 IPR000953 -
Eupl01g00481 1756 SUPERFAMILY Chromo domain-like 512 586 IPR016197 -
Eupl01g00481 1756 SMART chromo_7 531 590 IPR000953 -
Eupl01g00481 1756 SMART chromo_7 418 501 IPR000953 -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 1467 1486 - -
Eupl01g00481 1756 FunFam protein CHROMATIN REMODELING 5 isoform X2 535 587 - -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 271 287 - -
Eupl01g00481 1756 Pfam Domain of unknown function (DUF4208) 1531 1624 IPR025260 -
Eupl01g00481 1756 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 70 1679 - -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 114 164 - -
Eupl01g00481 1756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 945 1096 IPR001650 -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 1208 1247 - -
Eupl01g00481 1756 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 856 1086 - -
Eupl01g00481 1756 Pfam SNF2-related domain 644 913 IPR000330 GO:0005524|GO:0140658
Eupl01g00481 1756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 637 809 IPR014001 -
Eupl01g00481 1756 Gene3D - 1345 1455 - -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 191 220 - -
Eupl01g00481 1756 Gene3D - 616 855 IPR038718 -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 1688 1706 - -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 225 251 - -
Eupl01g00481 1756 SMART DUF4208_2 1522 1625 IPR025260 -
Eupl01g00481 1756 CDD CD2_tandem 531 586 - -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 1709 1728 - -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 1 371 - -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 1629 1756 - -
Eupl01g00481 1756 Gene3D - 856 1086 IPR027417 -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 67 88 - -
Eupl01g00481 1756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 849 1132 IPR027417 -
Eupl01g00481 1756 FunFam Photoperiod-independent early flowering 1 595 869 - -
Eupl01g00481 1756 CDD CD1_tandem 418 498 - -
Eupl01g00481 1756 MobiDBLite consensus disorder prediction 1657 1687 - -
Eupl01g00481 1756 SMART helicmild6 971 1055 IPR001650 -
Eupl01g00481 1756 Gene3D - 535 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00481 Eupl-Chr1 19302262 19360668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00481 647 1082 RAD5 or RAD16-like Gene Family AT1G02670 25.595 8.96e-34 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl01g00481 SNF2_N 1.9e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00481 K11367 - nnu:104608857 2762.25