Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00470 ATGAGCCTAGAGGATTCCTTCAAGTCTCTCTCCCTTGACTACCTTAACCTCCTCATCAACGGTCAAGCTTTTAGTGATGTAACCTTCAGCGTAGAAGGTCGTCTTGTTCACGCACACCGGTGCATCTTAGCAGCCAGGAGCCTTTTCTTCCGCAAATTTTTTTGTGGACCTGAACCGCCGGCCGGGCTGGACCCGGTCGGGTGTCGAATGAACTCGAATTCGTTGTCCTCGTCGCCGAGGGCAGGAAATTCACCTGTAATTCCTGTGAATTCGGTTGGTTATGAGGTTTTCTTGTTGATGTTGCAGTTCTTGTACAGTGGGCAGGTATCGATTGTGCCTCAGAAGCATGAGCCCAGGCCTAATTGTGGGGAGAGGGGTTGTTGGCACACACATTGCACCTCAGCCGTTGATCTCGCACTTGATACTCTCGCTGCCGCAAGATCGTTTGGTGTCGAGCAGCTCGCATTGCTCACTCAGAAACAATTGGCAAGCATGGTGGAGAAGGCCTCAATTGAGGACGTGATGAAGGTTTTAATAGCTTCAAGAAAGCAAGACATGCACCAGCTATGGACCACCTGTTCCCACCTTGTTGCGAAATCAGGCCTGCCCCCAGAAGTCCTCGCCAAGCACCTCCCCATCGAGGTGGTAGCTAAGATTGAAGAACTTCGACTCAAATCCTCTCTGGCACGCCGTTCCCTCATGCCCCATCATCACCACCACCACCACCACGATCTTAGCGTTGCTGCAGATCTCGAAGACCAGAAAATCCGTCGCATGCGCCGCGCCCTCGACTCGTCCGATGTCGAGCTTGTCAAGCTTATGGTCATGGGGGAAGGCCTTAATCTTGATGAAGCGCTTGCTCTACACTATGCAGTCGAGAATTGCAGCCGCGAGGTGGTTAAGGCCTTGCTTGAGCTCGGTGCCGCAGATGTCAATTACCCGGCAGGGCCGGCCGGCAAGACTCCACTTCATGTTGCGTCCGAGATGGTGTGCCCTGACATGGTGGCTGTGTTGCTCGACCACCACGCCGACCCCAATGTTCGAACTGTCGACGGAGTCACCCCGCTCGACGTGCTTCGCACACTCACCTCCGATTTCCTCTTCAAGGGGGCCGTCCCCGGACTCTCCCACATTGAGCCCAACAAACTTAGGCTCTGCCTTGAGCTTGTTCAATCGGCTGCTCTCGTCCTCTCTCGTGAAGAAGGCTGTGGTAATGCTCCCTCCACCACTCCCATTTATCCACCCATGAACAACGACCCAAATAGCAACAACATGGTCAGCCTCAGCCTCGATTCGAGATTGGTTTATCACAATCTCAGCGCAGCTCAATTGGGATGTAAAATGGATGGCGAAGACAACCAGAGAGAAGTTATGAATCGACATGGGTCCCAAGGTGGTTGTGATCCATCTATGTACCATTCTCATAACTTCTAG 1434 0.53 MSLEDSFKSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPEPPAGLDPVGCRMNSNSLSSSPRAGNSPVIPVNSVGYEVFLLMLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLAAARSFGVEQLALLTQKQLASMVEKASIEDVMKVLIASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIEVVAKIEELRLKSSLARRSLMPHHHHHHHHDLSVAADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHVASEMVCPDMVAVLLDHHADPNVRTVDGVTPLDVLRTLTSDFLFKGAVPGLSHIEPNKLRLCLELVQSAALVLSREEGCGNAPSTTPIYPPMNNDPNSNNMVSLSLDSRLVYHNLSAAQLGCKMDGEDNQREVMNRHGSQGGCDPSMYHSHNF* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00470 477 FunFam regulatory protein NPR5 isoform X1 4 199 - -
Eupl01g00470 477 Pfam Ankyrin repeats (3 copies) 266 348 IPR002110 GO:0005515
Eupl01g00470 477 Gene3D - 245 366 IPR036770 -
Eupl01g00470 477 SUPERFAMILY Ankyrin repeat 277 361 IPR036770 -
Eupl01g00470 477 SMART ANK_2a 318 347 IPR002110 GO:0005515
Eupl01g00470 477 SMART ANK_2a 283 313 IPR002110 GO:0005515
Eupl01g00470 477 SMART BTB_4 25 166 IPR000210 GO:0005515
Eupl01g00470 477 SUPERFAMILY POZ domain 6 195 IPR011333 -
Eupl01g00470 477 ProSiteProfiles Ankyrin repeat profile. 318 350 IPR002110 GO:0005515
Eupl01g00470 477 ProSiteProfiles BTB domain profile. 25 113 IPR000210 GO:0005515
Eupl01g00470 477 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 477 IPR044284 GO:0099402
Eupl01g00470 477 CDD BTB_POZ_NPR_plant 8 166 - -
Eupl01g00470 477 Gene3D Potassium Channel Kv1.1; Chain A 3 199 IPR011333 -
Eupl01g00470 477 ProSiteProfiles Ankyrin repeat region circular profile. 318 348 - -
Eupl01g00470 477 Pfam BTB/POZ domain 16 114 IPR000210 GO:0005515
Eupl01g00470 477 Pfam Domain of unknown function (DUF3420) 201 260 IPR024228 -
Eupl01g00470 477 FunFam regulatory protein NPR5 isoform X2 249 366 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00470 Eupl-Chr1 18829952 18833260 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Eupl01g00470 BTB 2.5e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00470 K14508 - nnu:104608860 838.565