Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00416 ATGGAGCGCAAGCGCTACTCTAAGAATGGATTCTCGTACTCCAATCTCTTCAATCTTGAGTCTTTGATGAACTTTCAACTTCCCCAACAAGATGATGATTTTGATAATTATGGGAATAATAGTCAGGATGAGAGCAGAGGTAGTCAAGGCCGAGGAGCCATGTTGGATCATAGTAATGGGATTGTACTGGAGAAGTCAGCAGAATTGGGCCTGACGAAGAAGAAGAAGCAGCGGCCTCGAATTGAGGTTGAGACTGATTCGAATACTTCCAGCACGAGAGACGCTGACAGCAACGACGAGTACGAAGACGGAAATTACAGTACCCACATTTCGGAGGAGCAGTACCGTTCAATGCTTGGGGAACACGTTCAGAAGTATAGGAGGGTGAGGTTCAAAGACTCCTCGTCAAATCCAGCCTCCACCCGAATGGGAATGTCAGTTCCAAAGCGTAATCTTGGTTCCCGAGGCAGGAAATTGGGGAATGAGGAGAGAGTGTTACATGGGATGGAAACCTCATCGGAGTATCTCGCTGACACTAGTCCTCTTAAGCCGGTGAACTATTATGAGGCAGATTTTACACCTGAGTATGGGACAGATAGGTTCTCTTCCTCCCTCGATTCTGCTTATTTGGATATTGGTGAGGGCATTACATATAGGATTCCTCCAACTTATGATAAGCTCGCGGCATCTCTGATGTTGCCTAGCTTTTCAGATATTCGGGTGGAGGAGTATTATTTAAAGGGTACCTTGGATATGGGGTCCCTGGCTGTGATGATGGCCACTGATAGAAGGTTAGGGTCCCGAAGCCGATCAGGGATGGGTGAGCCTCAGCCCCAGTACGAATCACTTCAGGCCAGATTAAAGGCCTTGTCAGCTTGTAATTCTGTCCAGAAGTTCAGCCTCCAAGTCTGCGATATTGGGTTGGATTCATCCTCTATCCCGGAGGGGGCAGCTGGAGGGATACAACGGTCTATTATGTCTGAAGCAGGAGCCTTGCAGGTTTACTATGTGAAGGTCTTGGAGAAAGGAGACACATATGAGATTATTGAACGCAGGTTACCTAAGAAGCAAATAGTGAAGAAAGATCCTGCCTTGATTGAGAAAGAGGAGATGGAGAAGATTGGGAAGGTCTGGGTGAACATTGTGAGAAGAGACATCCTGAAACATCACAAGATTTTCACCAATTTCCATAGGAAACAGCTAACTGATGCCAAGAGGTTCTCAGAAATATGTCAGAGAGAGGTAAAATTGAAGGTGAGTAGGTCAGTCAAATTGATGAGGGGAGCAGCAATTCGCACTAGGAAACTGGCTAGAGACATGCTAGTATTCTGGAAAAGAGTAGATAAGGAACAGGCGGAAGTGAGGAAGAAAGAGGAAAAAGAAGCTGCAGAAGCTCTAAAGCGCGAAGAGGAGCTCCGCGAAGCAAAGAGACAACAACAGAGGCTCAATTTCCTATTATCACAAACAGAGCTCTACAGTCACTTCATGCAGAACAAGCCGACCTCACAAACCTCCGAACCTTTGCCTGTGGGTGATGGAGATATGAATGAGCCGGAAGTGCCGTTGAGCTCTTCAGATGTTAAGCCAGGAGAGGAAGAAGATCCTGAGGAGGCTGAATTGAAAAGAGAAGCTTTCAGAGCTGCCCAACATGCAGTGTCACAACAGAAGAAGATAACTAGTGCGTTTGACAATGAATGTTTGAAGCTGCGTCAAGCTGCTGAGCCTGAAGACCAACCAAATGATACCGCGATTGCAGGATCTAGTAACATAGACCTACTGAATCCCTCGACAATGCCTATAACATCATCAGTGCAGACACCAGAGTTGTTTAAAGGTTGTCTTAAAGAATACCAGTTAAAGGGTCTGCAGTGGCTGGTTAATTGTTATGAGCAGGGTTTGAATGGCATCCTTGCGGATGAGATGGGCCTGGGAAAGACCATCCAAGCCATGGCATTCTTGGCTCATTTAGCTGAGGAAAAAAATATATGGGGGCCCTTTCTGGTTGTTGCACCTGCTTCTGTCTTGAACAACTGGGCTGATGAAATTAGTCGTTTCTGCCCTGACTTGAAAACACTTCCCTACTGGGGTGGGCTTCAGGAAAGGACGATACTTAGGAAAAACATAAATCCAAAACGTCTGTATAGAAGGGAGGCTGGATTCCACATACTCATTACCAGCTATCAATTGCTAGTGTCCGATGAGAAGTATTTCCGGCGTGTGAAATGGCAATATATGGTATTGGACGAAGCCCAGGCAATTAAAAGCTCAAACAGTATAAGGTGGAAGACATTGCTCAGTTTTAACTGTAGAAACCGCTTGCTTCTGACTGGGACACCCATACAGAATAACATGGCAGAGCTGTGGGCTCTTCTCCATTTCATTATGCCCACCTTGTTTGATAGCCACGAGCAGTTCAATGAGTGGTTTTCAAAAGGCATTGAGAACCATGCAGAACATGGAGGAACTTTAAACGAACACCAGCTTAACAGACTGCATGCTGTTCTAAAGCCATTCATGTTGCGTCGTGTTAAAAAAGATGTGATTACTGAGATGACAAGCAAAAAGGAGGTCACAGTGCACTGCAAGTTGAGTTCTCGGCAGCAGGCCTTTTATCAAGCTATAAAGAACAAGATATCTCTTGCCGAGTTGTTTGATGGCAGCCGGGGGCATCTTAATGAGAAGAAAATTCTGAACTTAATGAATATTGTTATCCAGCTGAGGAAGGTTTGCAACCACCCAGAGTTGTTTGAAAGGAATGAGGGGAGCACCTACCTGTACTTTGGGGAGATCCCAAATTCTCTTCTGCCCCCTCCCTTTGGGGAGTTGGAGGACATACATTATGCAGGAGGTCGGAATCCTATAACATACAGGGTACCAAAGCTCATCAATCAAGAATTCATCAACCATGCTGAAGCGCCTTGCTCAGCCGTCGGTCATAGTATTCAGAGAGAACCATTTGAGAATCTTTTCAATATATTCTCTCCAGAGAATATTTATCGATCTGTACTCCCGCACGATAAAAATTCAAATGAGTCTTCTTCTGTTATAAGTGGAGGATTTGGTTTTACCCGTTTAATGGATTTGTCCCCAGAAGAGGTTTTGTTTTTGGCTAAAGGTTCTTTTATGGAGAGGCTGTTGTTTTCCATTATGAGATGGGACCGGCAATTTTTAGATGAAATCTTGGACTTGTTCATGGAAGCTGAGGGTGATGATCTTCAGTATGGTAACCTTGAGAGTGGGAAAGTGAGAGCTGTTACACGGATGTTACTGATGCCATCAAGATCTGAGTCTAATTTACTCGGAAGGAAACTTGCAACTGGTCCTGGCCATGCCCCATTTGAGGCACTAGTTGTCTCTCATCAGGATAGGCTTATATCCAACACCAGGCTTCTTCATTCAACATATGCTTTCATCCCACGGACTAGAGCTCCACCAATCAATGCCCACTGCTCCAATAGAAACTTTGCATATAAAATGATTGAAGAACTACACCACCCCTGGCTTAAGAGGCTGTTCTTCGGGTTTGCACGCACCTCTGAGTGCAATGGACCTAGAGAGCCTAATGGTCCTCCTCATCACTTGATACAAGAGATTGATTCTGAGTTACCTGTTGCACAGCCCATTCTTCAGCTTACATACAAAATATTTGGGTCTTCTCCACCCATACAAAGCTTTGACCCTGCAAAGATGCTCACGGACTCTGGGAAGCTTCAAACGCTGGATATATTATTGAAGCGCTTGCGAGCTCAAAATCATCGTGTGCTTTTGTTTGCACAAATGACAAAAATGCTGAATATTCTTGAGGATTACATGAATTATAGGAAATACAGATATCTTCGACTTGACGGATCCTCCACTATTATGGATCGTCGTGACATGGTCAGAGACTTCCAGCATCGGAATGATATTTTTGTGTTCTTGCTGAGTACTAGAGCCGGTGGACTGGGTATCAACTTGACTGCTGCCGACACTGTCATCTTCTACGAAAGCGATTGGAATCCGACCTTGGATCTGCAGGCAATGGATAGAGCCCACCGGCTAGGTCAGACTAAGGAGGTTACAGTGTACCGGTTGATTTGTAAAGAGACAGTTGAAGAGAAGATTCTGCAAAGGGCCAGTCAGAAAAATACTGTGCAGCAGCTGGTCATGACAGGTGGCCATGTTCAGGGTGATCTCTTAGCTCCTGAGGACGTTGTTTCTTTACTTCTTGATGATGCCCAGTTGGAGCAGAAATTGAGAGAAGCTCCACAACAGGGTAAAGATCGGCAGAAAAAGAAACGTGGAACAAAGGGCATACGGGTAGATGCAGAAGGAGATGCATCTTTGGAAGATTTGATAAACAATGGATCACAGGGTGCTGGACTTGAGGCTGCTCCGCAGGAAGAGAGAGGCAAGACTAGTAACAAAAAGAGGAAAGGCAGCTCAGACAAGCAAACCCCTCCAAAACCACGGAGTTCTCAGAAAGCTCCCAAAAACATGGATTCTTTTGCGGGGATGAATGAACCTAACTATATTGACTATGAGTTGGAGGATCCCCCGAGGAACACAGACCCGCAACAACAGAAACCCAAGAGACCAAAGAGGCCAAAGAAAAGTGTAAATGAGGACCTTGAGCCAGCATTTACTGCAGCCACCACATTAGTTCCAGAATCTACTGAGTACCCACCGATATATGATTATAGCCCTTCCGGTTTCAGAGCAGAAGTAGAGGAAGAGATGTCACCTCATAGCCACTCTCCAACCAGTTAA 4749 0.4527 MERKRYSKNGFSYSNLFNLESLMNFQLPQQDDDFDNYGNNSQDESRGSQGRGAMLDHSNGIVLEKSAELGLTKKKKQRPRIEVETDSNTSSTRDADSNDEYEDGNYSTHISEEQYRSMLGEHVQKYRRVRFKDSSSNPASTRMGMSVPKRNLGSRGRKLGNEERVLHGMETSSEYLADTSPLKPVNYYEADFTPEYGTDRFSSSLDSAYLDIGEGITYRIPPTYDKLAASLMLPSFSDIRVEEYYLKGTLDMGSLAVMMATDRRLGSRSRSGMGEPQPQYESLQARLKALSACNSVQKFSLQVCDIGLDSSSIPEGAAGGIQRSIMSEAGALQVYYVKVLEKGDTYEIIERRLPKKQIVKKDPALIEKEEMEKIGKVWVNIVRRDILKHHKIFTNFHRKQLTDAKRFSEICQREVKLKVSRSVKLMRGAAIRTRKLARDMLVFWKRVDKEQAEVRKKEEKEAAEALKREEELREAKRQQQRLNFLLSQTELYSHFMQNKPTSQTSEPLPVGDGDMNEPEVPLSSSDVKPGEEEDPEEAELKREAFRAAQHAVSQQKKITSAFDNECLKLRQAAEPEDQPNDTAIAGSSNIDLLNPSTMPITSSVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPKRLYRREAGFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHAVLKPFMLRRVKKDVITEMTSKKEVTVHCKLSSRQQAFYQAIKNKISLAELFDGSRGHLNEKKILNLMNIVIQLRKVCNHPELFERNEGSTYLYFGEIPNSLLPPPFGELEDIHYAGGRNPITYRVPKLINQEFINHAEAPCSAVGHSIQREPFENLFNIFSPENIYRSVLPHDKNSNESSSVISGGFGFTRLMDLSPEEVLFLAKGSFMERLLFSIMRWDRQFLDEILDLFMEAEGDDLQYGNLESGKVRAVTRMLLMPSRSESNLLGRKLATGPGHAPFEALVVSHQDRLISNTRLLHSTYAFIPRTRAPPINAHCSNRNFAYKMIEELHHPWLKRLFFGFARTSECNGPREPNGPPHHLIQEIDSELPVAQPILQLTYKIFGSSPPIQSFDPAKMLTDSGKLQTLDILLKRLRAQNHRVLLFAQMTKMLNILEDYMNYRKYRYLRLDGSSTIMDRRDMVRDFQHRNDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKEVTVYRLICKETVEEKILQRASQKNTVQQLVMTGGHVQGDLLAPEDVVSLLLDDAQLEQKLREAPQQGKDRQKKKRGTKGIRVDAEGDASLEDLINNGSQGAGLEAAPQEERGKTSNKKRKGSSDKQTPPKPRSSQKAPKNMDSFAGMNEPNYIDYELEDPPRNTDPQQQKPKRPKRPKKSVNEDLEPAFTAATTLVPESTEYPPIYDYSPSGFRAEVEEEMSPHSHSPTS* 1583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00416 1582 MobiDBLite consensus disorder prediction 1412 1440 - -
Eupl01g00416 1582 Pfam Helicase conserved C-terminal domain 1239 1348 IPR001650 -
Eupl01g00416 1582 SMART ultradead3 610 805 IPR014001 -
Eupl01g00416 1582 MobiDBLite consensus disorder prediction 130 156 - -
Eupl01g00416 1582 FunFam Putative DNA helicase INO80 586 864 - -
Eupl01g00416 1582 ProSiteProfiles DBINO domain profile. 377 502 IPR020838 GO:0003677
Eupl01g00416 1582 PANTHER HELICASE SRCAP-RELATED 91 554 - -
Eupl01g00416 1582 MobiDBLite consensus disorder prediction 1412 1537 - -
Eupl01g00416 1582 MobiDBLite consensus disorder prediction 29 54 - -
Eupl01g00416 1582 Pfam DNA-binding domain 372 501 IPR020838 GO:0003677
Eupl01g00416 1582 CDD SF2_C_SNF 1227 1359 - -
Eupl01g00416 1582 FunFam DNA helicase INO80-like protein 1207 1458 - -
Eupl01g00416 1582 Gene3D - 589 867 IPR038718 -
Eupl01g00416 1582 MobiDBLite consensus disorder prediction 1507 1535 - -
Eupl01g00416 1582 MobiDBLite consensus disorder prediction 68 108 - -
Eupl01g00416 1582 MobiDBLite consensus disorder prediction 29 48 - -
Eupl01g00416 1582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 598 842 IPR027417 -
Eupl01g00416 1582 MobiDBLite consensus disorder prediction 499 539 - -
Eupl01g00416 1582 Coils Coil 449 488 - -
Eupl01g00416 1582 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1239 1389 IPR001650 -
Eupl01g00416 1582 MobiDBLite consensus disorder prediction 1462 1478 - -
Eupl01g00416 1582 Pfam SNF2-related domain 629 916 IPR000330 GO:0005524|GO:0140658
Eupl01g00416 1582 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 626 797 IPR014001 -
Eupl01g00416 1582 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 1409 IPR027417 -
Eupl01g00416 1582 MobiDBLite consensus disorder prediction 1479 1493 - -
Eupl01g00416 1582 MobiDBLite consensus disorder prediction 66 108 - -
Eupl01g00416 1582 Gene3D - 1208 1448 IPR027417 -
Eupl01g00416 1582 SMART helicmild6 1265 1348 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00416 Eupl-Chr1 17300716 17315839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00416 635 916 RAD5 or RAD16-like Gene Family AT5G43530 29.052 2.61e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Eupl01g00416 SNF2_N 5.1e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00416 K11665 - nnu:104606265 2610.1