Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00397 ATGACGAGCGCAGATGTCGAAGCCGTAGACTTCGAGCCCGAAGACGACGATCTCATGGACGAAGACGGTGCCGTTGAAGTCGAAGCGTCACCCAGAGCTCCTCTTCCTAAGCTCAAATCCGCCATCACTGGAGGTTCCTCCTTCGCCGCTCCAAAGAAGACCAAAGGTAGAGGCTTTCGGGAGGAAACAGAAGCCGAGCGCAACAATCGCTTCGCCTCTAAGGATTTTGATTCCTTGGACTCTGATGGCGGCCCCGGTGCCCAACGATCCATTGAAGGATGGATTATTTTGGTTACTGGAGTGCATGAAGAGGCGCAAGAGGATGATCTCCAAAACGCATTTGGTGAGTTTGGGGAGGTTAAGAACTTGCATCTAAATCTTGATCGCCGCACTGGATTTGTCAAGGGTTATGCACTGATTGAATATGAGAGGTTTGAGGAAGCTCAGGCTGCAATATCCACGATGAATGGTGTTGAGCTTCTCACCCAGACCATCTCGGTTGATTGGGCCTTCAGCAATGGACCATTCAAACGGAGGAACGTGAGGAGGAGATCACCACGTGGGCATCGTTCGAGGAGTCCCAGGAGGAGGTACTGA 597 0.5193 MTSADVEAVDFEPEDDDLMDEDGAVEVEASPRAPLPKLKSAITGGSSFAAPKKTKGRGFREETEAERNNRFASKDFDSLDSDGGPGAQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEVKNLHLNLDRRTGFVKGYALIEYERFEEAQAAISTMNGVELLTQTISVDWAFSNGPFKRRNVRRRSPRGHRSRSPRRRY* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00397 198 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 165 IPR000504 GO:0003723
Eupl01g00397 198 SUPERFAMILY RNA-binding domain, RBD 88 196 IPR035979 GO:0003676
Eupl01g00397 198 CDD RRM_RBM8 88 175 IPR033744 GO:0003729
Eupl01g00397 198 MobiDBLite consensus disorder prediction 1 85 - -
Eupl01g00397 198 MobiDBLite consensus disorder prediction 54 77 - -
Eupl01g00397 198 Gene3D - 46 185 IPR012677 -
Eupl01g00397 198 PANTHER RNA-BINDING PROTEIN 8A 5 198 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Eupl01g00397 198 FunFam RNA-binding protein 8A-like 28 185 - -
Eupl01g00397 198 MobiDBLite consensus disorder prediction 179 198 - -
Eupl01g00397 198 MobiDBLite consensus disorder prediction 8 24 - -
Eupl01g00397 198 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 172 IPR000504 GO:0003723
Eupl01g00397 198 SMART rrm1_1 95 168 IPR000504 GO:0003723
Eupl01g00397 198 PRINTS RNA binding motif protein 8 family signature 48 60 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Eupl01g00397 198 PRINTS RNA binding motif protein 8 family signature 159 171 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Eupl01g00397 198 PRINTS RNA binding motif protein 8 family signature 85 99 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Eupl01g00397 198 PRINTS RNA binding motif protein 8 family signature 141 157 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00397 Eupl-Chr1 16803938 16823810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00397 96 170 Eukaryotic Initiation Factors Gene Family AT3G11400 32.000 2.63e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00397 K12876 - ming:122060080 324.709