Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00340 ATGCTGATTCCCTCTTTAGCTATCTCCACTTGGTACACTATGATCAAACAAGTCGAACACACTGTTAAGTTTGTTTCTGATCACGTCCACAACGAAGCACTATTGGAGATTGAAACTATAGCAGGATCATTACTTCCGATAAATTCATCGGTGGAGAATTTAGTGAGACTTCTAAGTTCTCTCAATGCAACCCAACTGTCGGCTTTCTCTACGATCGAAACGAAGGTGGTGCCAAATCTGTTTCTAGTATTCTTGACGCTTCCATTATCGCAGATTTCTTATATAAGATCAGATGGAATTTTCTTCTCATATTACACTGAGGGAAATCGAACTATCGCATTGTATGCCAACACTTCATTTGTTGAAGCTACGGCAAATGCCTCTACTGAATACAAGTGGTACACTCAACGAGTAGACCGAAACACTGGGAAGCGATATGGAAAAGTCATTGTATTGAATTCAGTGGTCTCTACTAACTCAATTTGGTTTCAAGAAGCATTGAATAGTACACATGGACATGCTTGGTCGGGGACGGGACGGGGCATAACTCAGGAGCTTCTATTCCTTAGCACAGTTGCTATGGATGGAGGAGGGGTGGTCTCTCTTGGGTTTCCTGTGAAAACGTTTACGGATGTCATTTCGGGTATAATAAACATTCATCAGGGGAGCTTGTATTTGACTACAAAATATGGGAAATTACTCAAACAAACTGGGCCTCTCAACGCCAGCATGGTGCTCAATAATGACGCGGTTTCGATTCAATTTATGAAATCCAATGGTGATCGTGCAAAGACTGTTAACATTTCGTGCGAGCCCAATGATAACCCATTAAGAGCTTCTGATGTGAAAATCTGGGGAACAAAATATATGATTTATTGTGCACCTTTAAAGATAGCCAGGGTTCCATTGGTTTCTGTACTGGTTTTCCCTCACAAGGGACTAATGAGCCTTATTTATAAGCATAGCCACCTAGCATTGGTGTTGTTGTCACTAATGGTTGCATCTGTGGGTCTCTCTGTTACTTTCTTTATGCTTGTAATTATTAGAGCTGCTAGAAGAGAGATGTTCCTCTGTGCTGCACTTATAAAACAAATGGAAGCAACAAAACAAGCAGAAAGGAAGAGTATGAACAAAAGTCTCGCTTTTGCCAGTGCCAGCCATGACGTTCGTGCTTCTCTTGCAGCCATCACTGGTGTGATAGGGCTTTGTCGTGAGGAAGTTAATCCAAGATCCAAGTTGGAGATGAATTTGGCACAGATGAACACTTGTGCGGAGGACCTTATAGGAATATTGAACTCTGTTCTTGATACAAGTAAAATTGAAGCTGGAAAGATGCAACTTGAAGAGGAAGAATTTGATTTAGCACAACTCCTCGAGGAGTCAGTTAATATGTTCTATCCCATCGGTATAAAGAAAAGCGTAGACGTGATCTTGGATCCTTGTGACGACTCAGTTATCAAATCCTCTCATGTTAAAGGAGATCGTGGAAAACTTAAACAAATCCTAAATAACTTACTTAGCAATGCTGTGAAGTTTACATTAGAAGGGCATGTCTCTGTTCGTGCTTGGGTTGAGAAACCAAGTTTAGAAAGCTCAATACTGGCTTCTAACAATGTTGGTCTATGGAGCTGTTTACCAAGGATCCTTCACAAGAATAGTGAATCCTACAATGACTTGAGTTCCCTTCATACAGTTCAACAAAATCGAAATTCTATGAAGTTTGTATTTGAGGTGGACGACACAGGAAAGGGAATCCCAAAGGAAAAACAAAAATCCGTCTTTGAGAACTTTGTTCAAGTCAAAGAAACAGCTCTTGGACAAGGAGGCACTGGCTTGGGACTTGGTATTGTTCAATCTTTG 1860 0.4081 MLIPSLAISTWYTMIKQVEHTVKFVSDHVHNEALLEIETIAGSLLPINSSVENLVRLLSSLNATQLSAFSTIETKVVPNLFLVFLTLPLSQISYIRSDGIFFSYYTEGNRTIALYANTSFVEATANASTEYKWYTQRVDRNTGKRYGKVIVLNSVVSTNSIWFQEALNSTHGHAWSGTGRGITQELLFLSTVAMDGGGVVSLGFPVKTFTDVISGIINIHQGSLYLTTKYGKLLKQTGPLNASMVLNNDAVSIQFMKSNGDRAKTVNISCEPNDNPLRASDVKIWGTKYMIYCAPLKIARVPLVSVLVFPHKGLMSLIYKHSHLALVLLSLMVASVGLSVTFFMLVIIRAARREMFLCAALIKQMEATKQAERKSMNKSLAFASASHDVRASLAAITGVIGLCREEVNPRSKLEMNLAQMNTCAEDLIGILNSVLDTSKIEAGKMQLEEEEFDLAQLLEESVNMFYPIGIKKSVDVILDPCDDSVIKSSHVKGDRGKLKQILNNLLSNAVKFTLEGHVSVRAWVEKPSLESSILASNNVGLWSCLPRILHKNSESYNDLSSLHTVQQNRNSMKFVFEVDDTGKGIPKEKQKSVFENFVQVKETALGQGGTGLGLGIVQSL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00340 620 PRINTS Bacterial sensor protein C-terminal signature 574 588 IPR004358 GO:0016310|GO:0016772
Eupl01g00340 620 PRINTS Bacterial sensor protein C-terminal signature 592 602 IPR004358 GO:0016310|GO:0016772
Eupl01g00340 620 PRINTS Bacterial sensor protein C-terminal signature 608 620 IPR004358 GO:0016310|GO:0016772
Eupl01g00340 620 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 365 445 IPR036097 GO:0000155|GO:0007165
Eupl01g00340 620 ProSiteProfiles Histidine kinase domain profile. 384 620 IPR005467 -
Eupl01g00340 620 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 493 619 IPR003594 -
Eupl01g00340 620 SMART HisKA_10 377 443 IPR003661 GO:0000155|GO:0007165
Eupl01g00340 620 Gene3D - 445 620 IPR036890 -
Eupl01g00340 620 Gene3D - 364 444 - -
Eupl01g00340 620 SMART HKATPase_4 493 620 IPR003594 -
Eupl01g00340 620 PANTHER TWO-COMPONENT HISTIDINE KINASE 53 620 - -
Eupl01g00340 620 Pfam His Kinase A (phospho-acceptor) domain 380 443 IPR003661 GO:0000155|GO:0007165
Eupl01g00340 620 Coils Coil 440 460 - -
Eupl01g00340 620 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 432 619 IPR036890 -
Eupl01g00340 620 CDD HisKA 378 439 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00340 Eupl-Chr1 14658850 14663277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00340 8 620 Histidine Kinase Gene Family AT2G47430 43.156 1.63e-157 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00340 - - nnu:104590735 669.463