Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00339 ATGAAGCTCAGCCCATCGATTGTTTGGCGACCCGTTTGGCTGTTCATCGCTTTGGGTTTAGTAGTGATGCTGATTCCCTCTTTAGCTATCTCCACTTGGTACACTATGATCAAACAAGTCGAACACACTGTTAAGTTTGTTTCTGATCACGTCCACAACGAAGTACTATTGGAGATTGAAACTATAGCAGGATCATTACTTCCGATAAATTCATCGGCGGAGAATTTAGCGAGACTTCTAAGTTCTCTCAATGCAACCCAACTGTTGGCATTCTCTACGATCGAAACGAAGGTGGTGCCAAATCTGTTTCTAGTATTCTCGACGCTTCCATTATCGCAGATTTCTTATATAAGATCAGATGGAATTTTCTTCTCATATTACACTGAGGGAAATCGAACTATTGCATTGTATGCCAACACTTCATTTGTTGAAGCTACGGCGAATGCCTCTACTGAATACAAGTGGTACACTCAACGAGTAGACCGAAACACTGGGAAGCGATATGGGAAAGTCATTGTATTGAATTCAGTGGTCTCTACTAACTCAATTTGGTTTCAAGAAGCATTGAATAGTACACATGGACATGCTTGGTCAGGGACGGGACGGGGCATAACTCAGGAGCTTCTATTCCTTAGCACAGTTGCTATGGATGGAGGAGGGGTGGTCTCTCTTGGGTTTCCTGTGAAAACGTTTACGGATGTCGTTTCGGGTATAATAAACATTCATCAGGGGAGCTTGTATTTGACTACAAAGTATGAGAAATTACTCAAACAAACTGGGCCTCTCAATGCCAGCATGGTGCTCAATAATGACGCGGTTTCAATTCAATTTATAAAATCCAATGGTGATCGTGCAAAGACTGTTAACATTTCATGCGAGCCCAATGATAACCCATTAAGAGCTTCTGATGTGAAAATCTGGGGAACAAAATATATGATTTATTGTGCACCTTTAAAGATAGCCGGGGTTCCATTGGTTTCTGTACTGGTTTTCCCTCACAAGGGACTAATGAGCCTTATTTATAAGCATAGCCACCTAGCATTGGTGTTGTTGTCACTAATGGTTGCATCTGTGGGTCTCTCTGTTACCTTCTTTATGCTTGTAATTATTAGAGCTGCTAGAAGAGAGATGTTCCTCTGTGCTGCACTTATAAAACAAATGGAAGCAACAAAACAAGCAGAAAGGAAGAGTATGAACAAAAGTCTCGCTTTTGCCAGTGCTAGCCATGACGTTCGTGCTTCTCTTGCAACCATCACTGGTGTGATAGAGCTTTGTCGTGAGGAAGTTAATCCAAGATCCAAGTTGGAGATGAATTTGGCACAGATGAACACTTGTGCGGAGGACCTTATAGGAATATTGAACTCTGTTCTTGATACAAGTAAAATTGAAGCTGGAAAGATGCAACTTGAAGAGGAAGAATTTGATTTAGCACAACTCCTCGAGGAGTCAGTTAATATGTTCTATCCCATCGGTATAAAGAAAAGCGTAGACGTGATCTTGGATCCTTGTGACGACTCAGTTATCAAATCCTCTCATGTTAAAGGAGATCGTGGAAAACTTAAACAAATCCTAAATAACTTACTTAGCAATGCTGTGAAGTTTACATCAGAAGGGCATGTCTCTGTTCGTGCTTGGGTTGAGAAACCAAGTTTAGAAAGCTCAATACTGGCTTCTAACAATGTTGGTCTATGGAGCTGTTTACCAAGGATCCTTCACAAGAATAGTGAATCCTACAATGACTTGAGTTCCCTTCATACAGTTCAACAAAATCGAAATTCTACGAAGTTTGTATTTGAGGTGGACGACACAGGAAAAGGAATCCCAAAGGAAAAACAAAAATCCGTCTTTGAGAACTTTGTTCAAGTCAAAGAAACAGCTCTTGGACAAGGAGGCACTGGCTTGGGACTTGGTATTGTTCAATCTTTGGTACGTCTAATGGGCGGAGAGATCAGAATTATGGATAAGGATCCTAGTGAAAGAGGGACTTGTTTCAAATTCAACATTTTCCTTTCTACATGTGAGACCACATCTAGTACTATTTCAGAAGGAGAAAACGTCAAATTGCTCGGCAATCAGATCTCAAACGAGTTATGTCAGCAGTTGGGACTAAATATTCGGAATCAGAGCCCCAAGTCAAAAGGTTCACATGTTGTACTCTTGATTCAAGGCAATGAAAGAAGAAGAATCTCCAAGAAATTCATGGAGAACTTGGGCATAAAAGTTTCGATTGTAGATCGATGGGAACGTCTGTTTTCTACCCTCGAGAAGATAAAACAGAAATTGCACCTCACCCGTTTCAGCTCTTCTGAAAAGTTCGAATTCAGTTTCCTCAGCGGCTACATGAGCAACTCGACATCACATAATTCTAATATGGGAACAAAATTAAAAGATGTTCCTATGAGTATCACAGATCAAATGAGTCATATATTACCTCTCCACAGAATGTCAAGTTCTAGAAGTACATTGAGTTGCATACTAATCGTGATTGATGTTGGTGTTGGACCTTTCTCAGAGATGTGTTCTGTTGTCACTAATTTTAGTAGAGATCTCCATGATTCTCAATGTAAGGTTGTTTGGTTAGACAACCCTATTACTTCTAGCATGGAACTGAGAAGCCCCAAGGAGAAAATGCTAGTTCCTTGTGATCGCATTGTAATTAAACCATTTCATGGGACTCGCTTATATCAAGTGCTAAGAATGCTGCCAGAATTTGGGGGTACCATCCAAGGCTATGCAGCTAAAACCACAAAGGAAGTTGAACAACCTTCTACATCTACAGATCCTAGTCCATTTACAAAATCAACTCAACAAGTAGTAAATGGAGGTAGTAACCCAAGCAGTGATAAACCATTGAGTGGGAAGAAAGTCTTAGTGGCTGAAGACGTCGTGATCTTACGCAAGGTGGCTGAGGTTTTACTTAATCGCCTTGGTGCAACTATTGAATTTTGTGAGAATGGCGAAGAAGCTGCAAAACAAGTCTGTAAAGCTCTACAGGAAACTAATCAAAGGACACAAGGAACTTCAAAGATTCTTCCTTATGATTATATTTTCATGGATTGCGAGATGCCGATAATGAATGGGTATGAAGCAACAAGACAAATACGGATGGAAGAGAGACGGTATGATGTTCACATTCCCATTATAGCACTAACAGCTCATGCAGCGGCTGAGGAAGCAACTAAATCCATGCAGGCTGGAATGGATTTCCATTTAACTAAACCACTAAAAGTGGACCAGCTTTTGGATGCCATCCGTTCGATCCATAGTAATGAAAACTAG 3279 0.4062 MKLSPSIVWRPVWLFIALGLVVMLIPSLAISTWYTMIKQVEHTVKFVSDHVHNEVLLEIETIAGSLLPINSSAENLARLLSSLNATQLLAFSTIETKVVPNLFLVFSTLPLSQISYIRSDGIFFSYYTEGNRTIALYANTSFVEATANASTEYKWYTQRVDRNTGKRYGKVIVLNSVVSTNSIWFQEALNSTHGHAWSGTGRGITQELLFLSTVAMDGGGVVSLGFPVKTFTDVVSGIINIHQGSLYLTTKYEKLLKQTGPLNASMVLNNDAVSIQFIKSNGDRAKTVNISCEPNDNPLRASDVKIWGTKYMIYCAPLKIAGVPLVSVLVFPHKGLMSLIYKHSHLALVLLSLMVASVGLSVTFFMLVIIRAARREMFLCAALIKQMEATKQAERKSMNKSLAFASASHDVRASLATITGVIELCREEVNPRSKLEMNLAQMNTCAEDLIGILNSVLDTSKIEAGKMQLEEEEFDLAQLLEESVNMFYPIGIKKSVDVILDPCDDSVIKSSHVKGDRGKLKQILNNLLSNAVKFTSEGHVSVRAWVEKPSLESSILASNNVGLWSCLPRILHKNSESYNDLSSLHTVQQNRNSTKFVFEVDDTGKGIPKEKQKSVFENFVQVKETALGQGGTGLGLGIVQSLVRLMGGEIRIMDKDPSERGTCFKFNIFLSTCETTSSTISEGENVKLLGNQISNELCQQLGLNIRNQSPKSKGSHVVLLIQGNERRRISKKFMENLGIKVSIVDRWERLFSTLEKIKQKLHLTRFSSSEKFEFSFLSGYMSNSTSHNSNMGTKLKDVPMSITDQMSHILPLHRMSSSRSTLSCILIVIDVGVGPFSEMCSVVTNFSRDLHDSQCKVVWLDNPITSSMELRSPKEKMLVPCDRIVIKPFHGTRLYQVLRMLPEFGGTIQGYAAKTTKEVEQPSTSTDPSPFTKSTQQVVNGGSNPSSDKPLSGKKVLVAEDVVILRKVAEVLLNRLGATIEFCENGEEAAKQVCKALQETNQRTQGTSKILPYDYIFMDCEMPIMNGYEATRQIRMEERRYDVHIPIIALTAHAAAEEATKSMQAGMDFHLTKPLKVDQLLDAIRSIHSNEN* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00339 1092 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 387 467 IPR036097 GO:0000155|GO:0007165
Eupl01g00339 1092 PRINTS Bacterial sensor protein C-terminal signature 596 610 IPR004358 GO:0016310|GO:0016772
Eupl01g00339 1092 PRINTS Bacterial sensor protein C-terminal signature 614 624 IPR004358 GO:0016310|GO:0016772
Eupl01g00339 1092 PRINTS Bacterial sensor protein C-terminal signature 630 648 IPR004358 GO:0016310|GO:0016772
Eupl01g00339 1092 SMART REC_2 954 1084 IPR001789 GO:0000160
Eupl01g00339 1092 Gene3D - 386 466 - -
Eupl01g00339 1092 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 515 668 IPR003594 -
Eupl01g00339 1092 Pfam Response regulator receiver domain 956 1085 IPR001789 GO:0000160
Eupl01g00339 1092 CDD REC_hyHK_CKI1_RcsC-like 956 1084 - -
Eupl01g00339 1092 Coils Coil 462 482 - -
Eupl01g00339 1092 Pfam His Kinase A (phospho-acceptor) domain 402 465 IPR003661 GO:0000155|GO:0007165
Eupl01g00339 1092 MobiDBLite consensus disorder prediction 915 950 - -
Eupl01g00339 1092 SUPERFAMILY CheY-like 952 1088 IPR011006 -
Eupl01g00339 1092 PANTHER TWO-COMPONENT HISTIDINE KINASE 67 1085 - -
Eupl01g00339 1092 MobiDBLite consensus disorder prediction 915 952 - -
Eupl01g00339 1092 SMART HisKA_10 399 465 IPR003661 GO:0000155|GO:0007165
Eupl01g00339 1092 Gene3D - 933 1091 - -
Eupl01g00339 1092 Gene3D - 467 678 IPR036890 -
Eupl01g00339 1092 SMART HKATPase_4 515 672 IPR003594 -
Eupl01g00339 1092 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 454 668 IPR036890 -
Eupl01g00339 1092 ProSiteProfiles Histidine kinase domain profile. 406 672 IPR005467 -
Eupl01g00339 1092 ProSiteProfiles Response regulatory domain profile. 955 1088 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00339 Eupl-Chr1 14492740 14503652 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00339 1 1089 Histidine Kinase Gene Family AT2G47430 40.310 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Eupl01g00339 HATPase_c 3e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00339 - - nnu:104590735 1143.64