Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00331 ATGGAACAAGAAGAAGAAACCCCGGAAAGCCCAACTTCAATTCCAGAACCTTCTGCAACACCAGTGCTTGCCGATGACGAAACATTGGTTTCCACTGCCAATCTTCCTCTCCTTCAACCTCCCATTCCCCTTGTCCCTCCCACTGTTGTCGTTTCCACACCGACACCGACGCCACCACCACAAATCCCACCTTCACTTGTACCTCCAATTGCTCCGATTCCCACAATACCTCCAGTTCTCCGTCCTTTAGCACCACTACCTATCCGCCCCCCAATTCTCCGACCCCCACTACCACAAAATGGTGAAGCAGATGATGGCTCTGATTCAGATTCTGAAGGTGATGCCTCGGGCCCCACCCGTGCCGCTGCTGCTTCTGCCATGGACTATGAGATTTCAGAAGAGAGCAAACAGGTCCGAGAGCGGCAGGAGAAAGCAATGCAGGATCTCCTGATGAAGCGTCGCGCTTATGCTTTAGCTGTCCCCACTAATGATTCGGCCGTTCGTGCTCGTCTCCGTCGCCTTGGTGAGCCGATCACGCTTTTTGGAGAGAGGGAAATGGAACGACGGGACCGGTTACGGATGATTATGGTGAAGCTGGATGCAGAAGGACAGTTGGATAAGCTGTTGAAAGCTCACGAGGATGAGGAGGCTGCTGTTGCTGCTGATGTGGCAGAGGATGGTGATGGAGAAGGGCCTCAGACATACCCATTTTATACTGAAGGTTCGAAAGCTCTTTTAGAGGCTCGGGTTGACATTGTAAAGTATTCCATTGTGAGGGCAGCTTTGAGGCTTGAGCGTGCAAGGAGGAGAAGGGATGATCCAGATGAAGATTTGGATGCAGAGATGGATTGGGCTTTGAAGCAGGCGGGTGGTTTGGCCCTTGACTGTAGCGAAATTGGGGATGATCGGCCGCTTACAGGCTGTTCATTTTCGCACGATGGGACGCTACTTGCAACCTGTGCTATGAGCGGAGCCACCAAATTATGGAGCATGCCTCAAGTAAATAAGGTTGGTCCCTTAAAGGGCCACATGGAGCGTGCAACTGATGTCGCATTTTCTCCTGTTCATAACCATTTAGCAACTGCCTCTGCCGATCGGACTGCAATCTTATGGAACACTGAAGGGTCTATTCTGAAGAAATTTGAGGGGCATCTGGATCGTCTTGCACGTGTTGCATTCCACCCATCTGGTAAGTACTTGGGGACAGCTAGCTTTGACAAGACTTGGAGATTGTGGGATATTGATACTGGAATCGAGTTGCTTCTTCAAGAAGGTCATAGTAGGAGTGTTTATGGGATATGTTTCCATCGTGATGGATCTTTGGCTGCATCATGTGGGCTGGATGCACTTGCTCGTGTGTGGGATCTTCGTACTGGAAGAAGCATTCTTGCCTTGGAAGGCCATGTTAAGCCGGTTTTCGGAATTAGCTTCTCTCCCAATGGCTATCATTTAGCCACTGGCAGTGAAGATAATACTTGTCGTATCTGGGATCTAAGAAAGAAGAAATCCCTGTATGTAATACCTGCTCACTCCAATCTTATTTCACAAGTCAAGTTCGAGCCCCAAGAGGGATATTTTTTGGCAACTGCTTCATATGATATGACAGCTAAGGTATGGTCAGCCAGAGACTTCAAGCCTATCAAGACATTGTCTGGACATGAATCAAAGGTTACATCTTTAGACATTGTAGGAGATGGACAGTACATTGCAACCGTTGCGCATGACCGTACTATCAAGTTGTGGTCAAGCCGTAGCAGTGGAAATGAGAAGGCTATGGATATCGATTAG 1788 0.4888 MEQEEETPESPTSIPEPSATPVLADDETLVSTANLPLLQPPIPLVPPTVVVSTPTPTPPPQIPPSLVPPIAPIPTIPPVLRPLAPLPIRPPILRPPLPQNGEADDGSDSDSEGDASGPTRAAAASAMDYEISEESKQVRERQEKAMQDLLMKRRAYALAVPTNDSAVRARLRRLGEPITLFGEREMERRDRLRMIMVKLDAEGQLDKLLKAHEDEEAAVAADVAEDGDGEGPQTYPFYTEGSKALLEARVDIVKYSIVRAALRLERARRRRDDPDEDLDAEMDWALKQAGGLALDCSEIGDDRPLTGCSFSHDGTLLATCAMSGATKLWSMPQVNKVGPLKGHMERATDVAFSPVHNHLATASADRTAILWNTEGSILKKFEGHLDRLARVAFHPSGKYLGTASFDKTWRLWDIDTGIELLLQEGHSRSVYGICFHRDGSLAASCGLDALARVWDLRTGRSILALEGHVKPVFGISFSPNGYHLATGSEDNTCRIWDLRKKKSLYVIPAHSNLISQVKFEPQEGYFLATASYDMTAKVWSARDFKPIKTLSGHESKVTSLDIVGDGQYIATVAHDRTIKLWSSRSSGNEKAMDID* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00331 595 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 423 460 - -
Eupl01g00331 595 SMART WD40_4 333 372 IPR001680 GO:0005515
Eupl01g00331 595 SMART WD40_4 458 497 IPR001680 GO:0005515
Eupl01g00331 595 SMART WD40_4 374 413 IPR001680 GO:0005515
Eupl01g00331 595 SMART WD40_4 416 455 IPR001680 GO:0005515
Eupl01g00331 595 SMART WD40_4 543 582 IPR001680 GO:0005515
Eupl01g00331 595 SMART WD40_4 500 540 IPR001680 GO:0005515
Eupl01g00331 595 SMART WD40_4 291 330 IPR001680 GO:0005515
Eupl01g00331 595 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 136 207 - -
Eupl01g00331 595 ProSiteProfiles Trp-Asp (WD) repeats profile. 423 464 IPR001680 GO:0005515
Eupl01g00331 595 SUPERFAMILY WD40 repeat-like 299 581 IPR036322 GO:0005515
Eupl01g00331 595 CDD WD40 304 582 - -
Eupl01g00331 595 Gene3D - 466 592 IPR015943 GO:0005515
Eupl01g00331 595 MobiDBLite consensus disorder prediction 1 63 - -
Eupl01g00331 595 PANTHER WD40 REPEAT PROTEIN 108 582 - -
Eupl01g00331 595 SUPERFAMILY PRP4-like 145 200 IPR036285 -
Eupl01g00331 595 Gene3D - 132 205 IPR036285 -
Eupl01g00331 595 ProSitePatterns Trp-Asp (WD) repeats signature. 400 414 IPR019775 -
Eupl01g00331 595 ProSiteProfiles Trp-Asp (WD) repeats profile. 381 422 IPR001680 GO:0005515
Eupl01g00331 595 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 465 499 - -
Eupl01g00331 595 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 340 374 - -
Eupl01g00331 595 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 507 540 - -
Eupl01g00331 595 SMART pr04_2 162 215 IPR014906 -
Eupl01g00331 595 MobiDBLite consensus disorder prediction 39 63 - -
Eupl01g00331 595 ProSitePatterns Trp-Asp (WD) repeats signature. 359 373 IPR019775 -
Eupl01g00331 595 Gene3D - 284 465 IPR015943 GO:0005515
Eupl01g00331 595 FunFam U4/U6 small nuclear ribonucleoprotein PRP4-like protein 425 595 - -
Eupl01g00331 595 ProSitePatterns Trp-Asp (WD) repeats signature. 484 498 IPR019775 -
Eupl01g00331 595 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 549 IPR001680 GO:0005515
Eupl01g00331 595 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 374 IPR001680 GO:0005515
Eupl01g00331 595 ProSiteProfiles Trp-Asp (WD) repeats profile. 465 506 IPR001680 GO:0005515
Eupl01g00331 595 ProSiteProfiles Trp-Asp (WD) repeats profile. 550 591 IPR001680 GO:0005515
Eupl01g00331 595 PRINTS G protein beta WD-40 repeat signature 400 414 IPR020472 -
Eupl01g00331 595 PRINTS G protein beta WD-40 repeat signature 484 498 IPR020472 -
Eupl01g00331 595 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Eupl01g00331 595 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 550 585 - -
Eupl01g00331 595 Pfam WD domain, G-beta repeat 503 540 IPR001680 GO:0005515
Eupl01g00331 595 Pfam WD domain, G-beta repeat 376 413 IPR001680 GO:0005515
Eupl01g00331 595 Pfam WD domain, G-beta repeat 336 372 IPR001680 GO:0005515
Eupl01g00331 595 Pfam WD domain, G-beta repeat 545 582 IPR001680 GO:0005515
Eupl01g00331 595 Pfam WD domain, G-beta repeat 463 497 IPR001680 GO:0005515
Eupl01g00331 595 Pfam WD domain, G-beta repeat 424 455 IPR001680 GO:0005515
Eupl01g00331 595 ProSitePatterns Trp-Asp (WD) repeats signature. 442 456 IPR019775 -
Eupl01g00331 595 MobiDBLite consensus disorder prediction 90 137 - -
Eupl01g00331 595 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 381 417 - -
Eupl01g00331 595 Pfam pre-mRNA processing factor 4 (PRP4) like 167 193 IPR014906 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00331 385 592 U-box Gene Family AT2G33340 23.707 3.07e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00331 K12662 - nnu:104598354 791.956