Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00290 ATGGAGTACGGACATGCTCGCAAGAGGGGGAGGCAGGACGCTACCTTAAACGGGAATGGGGGACTTAAGCGAAACAAGCAAGAAATGGAGTCCTATTCAACTGGTATAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGCACTGCTGGGTGCCCGTTTGGTGAGGGCTGCCACTTCTTGCACTATGTTCCAGGTGGAATCAATGCAGTGGCTCAGATGACCAACTTAGGTGGCAACCAAGCTCTCCCTCCATCCTCTAGAAACCCAGTGGTCCCACAATCCATCCCCAATGGTTCATCTTCTCCGGCTGTCAAGACACGCATGTGCAACAAATTCAATACTGCAGAAGGGTGTAAATTTGGGGATAAATGCCATTTTGCCCATAGCGAGAGGGAACTTGGCAAGTCCATTGTTCCATCTCATGAAGATCCCCGGGGTATGGGTCCTATGACAGGCAGGTTGGCAGGCAGGCTTGAGCCACCCCCTCCAGGCCTTGCTGCTGCTGCAAGTTTTGGTGCCTCAGCAACTGCCAAGATCAGTGTGGATGCCTCCCTTGCTGGAGCAATCATCGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCTGACAGGTGCTAAACTTGCCATACGGGAGCATGAGTCAGATCCCAACCTAAGGAACATTGAGCTCGAGGGGACCTTTGATCAGATCAAGCAAGCCAGCGCAATGGTCCGTGAGCTAATTGTGAACATTGGTTCAGCCGCAGGCCCAGGCCCCATCATGAACACTGCGGTGGCAGCCTCTGCTGGTTCAGCAAGCAACTTTAAGACGAAGCTGTGTGAGAACTTTGCGAAAGGGTCGTGCACATTTGGGGAAAGGTGCCACTTTGCACATGGTGCAAATGAACTGCGCAAAGCAGGAATGTGA 912 0.523 MEYGHARKRGRQDATLNGNGGLKRNKQEMESYSTGIGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGINAVAQMTNLGGNQALPPSSRNPVVPQSIPNGSSSPAVKTRMCNKFNTAEGCKFGDKCHFAHSERELGKSIVPSHEDPRGMGPMTGRLAGRLEPPPPGLAAAASFGASATAKISVDASLAGAIIGKGGVNSKQICRLTGAKLAIREHESDPNLRNIELEGTFDQIKQASAMVRELIVNIGSAAGPGPIMNTAVAASAGSASNFKTKLCENFAKGSCTFGERCHFAHGANELRKAGM* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00290 303 FunFam Zinc finger CCCH domain-containing protein 99 136 - -
Eupl01g00290 303 PANTHER CCCH ZINC FINGER/TIS11-RELATED 13 150 IPR045877 GO:0003729
Eupl01g00290 303 FunFam Zinc finger CCCH domain-containing protein 265 300 - -
Eupl01g00290 303 Pfam RNA-binding, Nab2-type zinc finger 42 62 - -
Eupl01g00290 303 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 169 245 IPR036612 GO:0003723
Eupl01g00290 303 FunFam Zinc finger CCCH domain-containing protein 52 172 269 - -
Eupl01g00290 303 CDD KH-I_AtC3H36_like 179 243 - -
Eupl01g00290 303 SMART kh_6 174 244 IPR004087 GO:0003676
Eupl01g00290 303 MobiDBLite consensus disorder prediction 84 104 - -
Eupl01g00290 303 SUPERFAMILY CCCH zinc finger 268 299 IPR036855 GO:0046872
Eupl01g00290 303 Gene3D - 98 136 - -
Eupl01g00290 303 Gene3D - 265 301 - -
Eupl01g00290 303 SUPERFAMILY CCCH zinc finger 103 135 IPR036855 GO:0046872
Eupl01g00290 303 Gene3D K Homology domain, type 1 171 264 IPR036612 GO:0003723
Eupl01g00290 303 ProSiteProfiles Zinc finger C3H1-type profile. 104 132 IPR000571 GO:0046872
Eupl01g00290 303 MobiDBLite consensus disorder prediction 1 38 - -
Eupl01g00290 303 SUPERFAMILY CCCH zinc finger 38 63 IPR036855 GO:0046872
Eupl01g00290 303 Pfam KH domain 177 241 IPR004088 GO:0003723
Eupl01g00290 303 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 106 131 IPR000571 GO:0046872
Eupl01g00290 303 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 270 294 IPR000571 GO:0046872
Eupl01g00290 303 MobiDBLite consensus disorder prediction 18 38 - -
Eupl01g00290 303 ProSiteProfiles Type-1 KH domain profile. 175 239 - -
Eupl01g00290 303 SMART c3hfinal6 37 64 IPR000571 GO:0046872
Eupl01g00290 303 SMART c3hfinal6 104 131 IPR000571 GO:0046872
Eupl01g00290 303 SMART c3hfinal6 269 295 IPR000571 GO:0046872
Eupl01g00290 303 ProSiteProfiles Zinc finger C3H1-type profile. 37 65 IPR000571 GO:0046872
Eupl01g00290 303 ProSiteProfiles Zinc finger C3H1-type profile. 269 296 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00290 Eupl-Chr1 12344371 12358192 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00290 32 138 C3H Transcription Factor Family AT1G68200 27.103 1.83e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Eupl01g00290 KH_1 9.3e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00290 - - ming:122061540 469.159