Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Eupl01g00290 | ATGGAGTACGGACATGCTCGCAAGAGGGGGAGGCAGGACGCTACCTTAAACGGGAATGGGGGACTTAAGCGAAACAAGCAAGAAATGGAGTCCTATTCAACTGGTATAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGCACTGCTGGGTGCCCGTTTGGTGAGGGCTGCCACTTCTTGCACTATGTTCCAGGTGGAATCAATGCAGTGGCTCAGATGACCAACTTAGGTGGCAACCAAGCTCTCCCTCCATCCTCTAGAAACCCAGTGGTCCCACAATCCATCCCCAATGGTTCATCTTCTCCGGCTGTCAAGACACGCATGTGCAACAAATTCAATACTGCAGAAGGGTGTAAATTTGGGGATAAATGCCATTTTGCCCATAGCGAGAGGGAACTTGGCAAGTCCATTGTTCCATCTCATGAAGATCCCCGGGGTATGGGTCCTATGACAGGCAGGTTGGCAGGCAGGCTTGAGCCACCCCCTCCAGGCCTTGCTGCTGCTGCAAGTTTTGGTGCCTCAGCAACTGCCAAGATCAGTGTGGATGCCTCCCTTGCTGGAGCAATCATCGGGAAGGGTGGTGTGAACTCAAAGCAGATCTGTCGCCTGACAGGTGCTAAACTTGCCATACGGGAGCATGAGTCAGATCCCAACCTAAGGAACATTGAGCTCGAGGGGACCTTTGATCAGATCAAGCAAGCCAGCGCAATGGTCCGTGAGCTAATTGTGAACATTGGTTCAGCCGCAGGCCCAGGCCCCATCATGAACACTGCGGTGGCAGCCTCTGCTGGTTCAGCAAGCAACTTTAAGACGAAGCTGTGTGAGAACTTTGCGAAAGGGTCGTGCACATTTGGGGAAAGGTGCCACTTTGCACATGGTGCAAATGAACTGCGCAAAGCAGGAATGTGA | 912 | 0.523 | MEYGHARKRGRQDATLNGNGGLKRNKQEMESYSTGIGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGINAVAQMTNLGGNQALPPSSRNPVVPQSIPNGSSSPAVKTRMCNKFNTAEGCKFGDKCHFAHSERELGKSIVPSHEDPRGMGPMTGRLAGRLEPPPPGLAAAASFGASATAKISVDASLAGAIIGKGGVNSKQICRLTGAKLAIREHESDPNLRNIELEGTFDQIKQASAMVRELIVNIGSAAGPGPIMNTAVAASAGSASNFKTKLCENFAKGSCTFGERCHFAHGANELRKAGM* | 304 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Eupl01g00290 | 303 | FunFam | Zinc finger CCCH domain-containing protein | 99 | 136 | - | - | |
Eupl01g00290 | 303 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 13 | 150 | IPR045877 | GO:0003729 | |
Eupl01g00290 | 303 | FunFam | Zinc finger CCCH domain-containing protein | 265 | 300 | - | - | |
Eupl01g00290 | 303 | Pfam | RNA-binding, Nab2-type zinc finger | 42 | 62 | - | - | |
Eupl01g00290 | 303 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 169 | 245 | IPR036612 | GO:0003723 | |
Eupl01g00290 | 303 | FunFam | Zinc finger CCCH domain-containing protein 52 | 172 | 269 | - | - | |
Eupl01g00290 | 303 | CDD | KH-I_AtC3H36_like | 179 | 243 | - | - | |
Eupl01g00290 | 303 | SMART | kh_6 | 174 | 244 | IPR004087 | GO:0003676 | |
Eupl01g00290 | 303 | MobiDBLite | consensus disorder prediction | 84 | 104 | - | - | |
Eupl01g00290 | 303 | SUPERFAMILY | CCCH zinc finger | 268 | 299 | IPR036855 | GO:0046872 | |
Eupl01g00290 | 303 | Gene3D | - | 98 | 136 | - | - | |
Eupl01g00290 | 303 | Gene3D | - | 265 | 301 | - | - | |
Eupl01g00290 | 303 | SUPERFAMILY | CCCH zinc finger | 103 | 135 | IPR036855 | GO:0046872 | |
Eupl01g00290 | 303 | Gene3D | K Homology domain, type 1 | 171 | 264 | IPR036612 | GO:0003723 | |
Eupl01g00290 | 303 | ProSiteProfiles | Zinc finger C3H1-type profile. | 104 | 132 | IPR000571 | GO:0046872 | |
Eupl01g00290 | 303 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Eupl01g00290 | 303 | SUPERFAMILY | CCCH zinc finger | 38 | 63 | IPR036855 | GO:0046872 | |
Eupl01g00290 | 303 | Pfam | KH domain | 177 | 241 | IPR004088 | GO:0003723 | |
Eupl01g00290 | 303 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 106 | 131 | IPR000571 | GO:0046872 | |
Eupl01g00290 | 303 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 270 | 294 | IPR000571 | GO:0046872 | |
Eupl01g00290 | 303 | MobiDBLite | consensus disorder prediction | 18 | 38 | - | - | |
Eupl01g00290 | 303 | ProSiteProfiles | Type-1 KH domain profile. | 175 | 239 | - | - | |
Eupl01g00290 | 303 | SMART | c3hfinal6 | 37 | 64 | IPR000571 | GO:0046872 | |
Eupl01g00290 | 303 | SMART | c3hfinal6 | 104 | 131 | IPR000571 | GO:0046872 | |
Eupl01g00290 | 303 | SMART | c3hfinal6 | 269 | 295 | IPR000571 | GO:0046872 | |
Eupl01g00290 | 303 | ProSiteProfiles | Zinc finger C3H1-type profile. | 37 | 65 | IPR000571 | GO:0046872 | |
Eupl01g00290 | 303 | ProSiteProfiles | Zinc finger C3H1-type profile. | 269 | 296 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Eupl01g00290 | Eupl-Chr1 | 12344371 | 12358192 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Eupl01g00290 | 32 | 138 | C3H Transcription Factor Family | AT1G68200 | 27.103 | 1.83e-06 | 47.0 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Eupl01g00290 | KH_1 | 9.3e-12 | CL0007 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Eupl01g00290 | - | - | ming:122061540 | 469.159 |