Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00240 ATGGAGTTGGGTTTGAGCTTGGGAGATGCTTCGAAGCCATTTGCGTTCATGGAGAGGACTCGTAGGATTGAGAACAAGGGTTTAGGGTTTTGCATGGGCTTGGGGGTGGGGTTTAATGGTAGAGAAGAAGAAAAAGGAGAAGATGATGAAAGAGAACGTAGGACTAGGAGAGAAGGCACAATAGATAGAGAAGATAGAGAGGAAAGAAGGGTTTCTGCAGGTCCGCATCAGCCTGTTCAGCTTGATCTTCTCCCTCTCGCTCCTGTTCCTCGTAACCCATCTTCTTCACAGATCGGATTTCCATGGCCGTCTGAAAACGGGAATTCTGAAGCTTCTTCGGGTCATTTGGGGGTATCAGCTAGAGGGTTCGATGTTAATCGATTGCCAACGACGGAGGATGTCGATGATGGGGCTGTTGTTTCTTCTCCAAACAGCACTCTTTCTTCTTTCCAGATGGATTTCTCCATTTACAGAGGCGGAGATGGAGTAGGAAGCAAGAGAGATTCAGAAATCGCAGCGAACGAAGTAGAGACAGAGAGAACTTCGTCGAGAGCAAGCGATGAGGAGGACAACGGTCTCACCAGGAAGAAACTTAGACTCTCTAAAGATCAATCGGCTTTTCTTGAAGAAAGCTTCAAAGAACACAACACCCTCAACCCAAAACAGAAGCTTGCTCTTGCCAAACAGCTTAATCTTCGTCCTCGCCAAGTTGAAGTTTGGTTCCAAAACAGAAGAGCCAGAACAAAACTGAAGCAAACGGAGGTTGACTGCGAGTATTTAAAGCGCTGCTGCGAAACATTGACGGAAGAGAACAGGAGATTACAGAAGGAACTTCAAGAGCTAAGAGCTTTAAAGACGTCACAACCCTTCTATATGCAACTCCCTGCCACCACCCTCACTATGTGCCCGTCCTGTGAACGCGTCGCCACCACCACCACCACCACCACCACTACCAACTCTGCCACCGCTGCCGCCGACAACAACAACAAAACTACCACCACCAAAGCCACAGGTTTCTCCCTCACCAAGCCCAGATTCTATCCTTTTTCTCACGCTCACGCCCACCAGTCAGCCGCCTCTTAG 1083 0.4866 MELGLSLGDASKPFAFMERTRRIENKGLGFCMGLGVGFNGREEEKGEDDERERRTRREGTIDREDREERRVSAGPHQPVQLDLLPLAPVPRNPSSSQIGFPWPSENGNSEASSGHLGVSARGFDVNRLPTTEDVDDGAVVSSPNSTLSSFQMDFSIYRGGDGVGSKRDSEIAANEVETERTSSRASDEEDNGLTRKKLRLSKDQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATTTTTTTTTNSATAAADNNNKTTTTKATGFSLTKPRFYPFSHAHAHQSAAS* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00240 360 ProSitePatterns 'Homeobox' domain signature. 226 249 IPR017970 GO:0000981|GO:0006355
Eupl01g00240 360 Pfam Homeobox associated leucine zipper 251 285 IPR003106 GO:0006355|GO:0043565
Eupl01g00240 360 ProSiteProfiles 'Homeobox' domain profile. 191 251 IPR001356 GO:0003677
Eupl01g00240 360 MobiDBLite consensus disorder prediction 40 73 - -
Eupl01g00240 360 MobiDBLite consensus disorder prediction 91 115 - -
Eupl01g00240 360 SMART halz 251 294 IPR003106 GO:0006355|GO:0043565
Eupl01g00240 360 SUPERFAMILY Homeodomain-like 189 252 IPR009057 -
Eupl01g00240 360 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 33 332 - -
Eupl01g00240 360 MobiDBLite consensus disorder prediction 163 196 - -
Eupl01g00240 360 Pfam Homeodomain 195 249 IPR001356 GO:0003677
Eupl01g00240 360 Gene3D - 199 249 - -
Eupl01g00240 360 MobiDBLite consensus disorder prediction 91 117 - -
Eupl01g00240 360 MobiDBLite consensus disorder prediction 34 79 - -
Eupl01g00240 360 FunFam Homeobox-leucine zipper protein HAT22 199 245 - -
Eupl01g00240 360 SMART HOX_1 193 255 IPR001356 GO:0003677
Eupl01g00240 360 CDD bZIP 244 283 - -
Eupl01g00240 360 MobiDBLite consensus disorder prediction 161 196 - -
Eupl01g00240 360 Pfam HD-ZIP protein N terminus 70 150 IPR006712 GO:0005634
Eupl01g00240 360 CDD homeodomain 195 252 IPR001356 GO:0003677
Eupl01g00240 360 Coils Coil 257 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00240 Eupl-Chr1 7709358 7711029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00240 76 309 Homeobox Transcription Factor Family AT5G47370 57.676 5.57e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Eupl01g00240 HD-ZIP_N 3.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00240 K09338 - nnu:104603567 462.611