Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00239 ATGGGGGATGAGAGGGAAGATACAATGGATCTCGATTTGAATCTTGAGCCGTCATTTCCTCCATCACCATCTCCATCGGTGGACGAAACGCTCCGACGAATCGAAGAGGTCGCACTTAGATCCAGGCATCGATGGAGGAGGTCGAGACCGAGTAGAATCCCACCTGAAACGAGGAACATTTCGATGGATTTGGTCGTCAACCCTCCCCGCGAGATCGAGAGATTGCAGACTGGGGAGGGCAGTGTTGCTGTCGTCGAAGAAAGAACAATCCATAGGTGCAAAACACGGAGAGGAAACGCTATCGATCTGATAGCCAAGGCGTTGGGGAAAGATGAAGATGTTGGGAAGGAGATTAGCAGTAGCTCCAGCTTTTTCGATTGTAATATATGCTTCGAAATGGCGACGGATCCGGTTCTGACCTCATGTGGTCACTTGTTCTGTTGGCCATGTTTGTATCAGTGGTTGCACGTTCATTCAGATACTAAAGAGTGTCCCGTGTGCAAGGGAGAGGTGATGGATATGAACATTACTCCAATTTACGGCCGTGGAAACGATGCTGGTAAGGCTGATAAGGAGGATAAGGCTGATAAGGAAGAGCAAGTGACAGGATTGAAGGTCCCTCCTAGGCCCCAAGCACGGCGGATCGAAAGCTTGAGGCAGAGCATTCATAGGGTTGCGTCTTCTTCTCCGGTTGAGGAGGTGATTCGGCGACTTGGCCGTAGGTTTGATTTAACTGGAGAGTTGGGCACGTCTCATAATCTTGAACGTGCCAGTCGGGGGATTCGCAGAGGAAGATTAGAATTGTTTCCACATTTGGCACAAAATATTCTTGGACCACAAGAAGATATAGTGGATTTAACACAGGAGAATGCGGTCAGCTCCGAGGCAGAGGGCAGCCAGCGGCTACCTTCTTCCCGGCTGCTCCTGAGATCACATTCGCAAAGAACTTCTTCGCTCCTTTCATCCGTGCAGGCATACTTTCTTGGTCATCCATTGAGGAGAAACCACACTCAGTCTCCTCCTGTTGAGGATAGAGATTCTGTTTCGAGCATTGCTGCTGTTGTAAACTCGGAAAGCCAGACAGTGGATACTGCTATGGAAATAGATTCAATGGTGTCTGTTACTTCATCTTCCTCACGGAGAAGAACGGATACTTCGAGGGTTACAGATGTGGATGATGGAGTTCCCCGCGCACCTAGAAGAAGAAGGTTGAACTGA 1218 0.4918 MGDEREDTMDLDLNLEPSFPPSPSPSVDETLRRIEEVALRSRHRWRRSRPSRIPPETRNISMDLVVNPPREIERLQTGEGSVAVVEERTIHRCKTRRGNAIDLIAKALGKDEDVGKEISSSSSFFDCNICFEMATDPVLTSCGHLFCWPCLYQWLHVHSDTKECPVCKGEVMDMNITPIYGRGNDAGKADKEDKADKEEQVTGLKVPPRPQARRIESLRQSIHRVASSSPVEEVIRRLGRRFDLTGELGTSHNLERASRGIRRGRLELFPHLAQNILGPQEDIVDLTQENAVSSEAEGSQRLPSSRLLLRSHSQRTSSLLSSVQAYFLGHPLRRNHTQSPPVEDRDSVSSIAAVVNSESQTVDTAMEIDSMVSVTSSSSRRRTDTSRVTDVDDGVPRAPRRRRLN* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00239 405 MobiDBLite consensus disorder prediction 372 405 - -
Eupl01g00239 405 ProSitePatterns Zinc finger RING-type signature. 142 151 IPR017907 -
Eupl01g00239 405 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 114 306 IPR045103 GO:0005783|GO:0006511|GO:0061630
Eupl01g00239 405 ProSiteProfiles Zinc finger RING-type profile. 127 168 IPR001841 -
Eupl01g00239 405 SUPERFAMILY RING/U-box 126 173 - -
Eupl01g00239 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 181 IPR013083 -
Eupl01g00239 405 SMART ring_2 127 167 IPR001841 -
Eupl01g00239 405 MobiDBLite consensus disorder prediction 383 405 - -
Eupl01g00239 405 MobiDBLite consensus disorder prediction 1 28 - -
Eupl01g00239 405 Pfam Zinc finger, C3HC4 type (RING finger) 127 167 IPR018957 GO:0046872
Eupl01g00239 405 CDD RING-HC_AtRMA-like 125 168 - -
Eupl01g00239 405 FunFam Zinc finger family protein 108 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00239 Eupl-Chr1 7621010 7630493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00239 1 392 C3H Transcription Factor Family AT3G58030 41.043 5.54e-75 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00239 K10666 - mof:131167998 329.331