Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00220 ATGGCAGACACTGAGGATATTCAGCCTCTCGTTTGTGACAATGGAACAGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCGAGGGCTGTGTTTCCTAGCATTGTAGGTCGCCCTCGTCACACCGGTGTGATGGTTGGGATGGGCCAGAAAGATGCATATGTAGGTGATGAGGCTCAATCCAAGCGTGGTATTTTAACCCTGAAATACCCCATTGAACATGGTATAGTGAGCAACTGGGATGACATGGAGAAGATCTGGCACCACACATTCTACAATGAGCTTCGTGTGGCCCCTGAAGAGCACCCTGTTCTCCTCACTGAAGCACCTCTCAACCCCAAGGCTAATCGTGAGAAGATGACTCAAATCATGTTTGAGACCTTCAATGCTCCTGCTATGTATGTTGCTATCCAGGCTGTTCTTTCCCTTTATGCCAGTGGTCGTACAACTGGTATTGTTCTGGACTCTGGGGATGGTGTCAGCCACACGGTTCCCATCTACGAAGGCTATGCCCTACCGCATGCCATCCTGCGTCTCGACCTTGCAGGCCGTGATCTCACAGATGCCCTGATGAAAATCCTGACTGAGCGTGGCTACTCTTTCACCACCACAGCCGAGCGCGAAATTGTGAGGGACATGAAGGAGAAGCTGGCCTACATTGCTCTTGACTATGAGCAGGAGTTAGAGACAGCCAAGACCAGCTCGTCTGTGGAGAAGAGCTATGAGCTGCCTGATGGACAGGTGATTACCATTGGAGCTGAGCGTTTCCGATGCCCAGAGGTCCTCTTCCAGCCATCGATGATTGGTATGGAAGCTGCTGGGATACATGAGACCACATACAACTCTATCATGAAGTGTGATGTTGATATCAGGAAGGATCTTTATGGCAATATTGTCCTCAGTGGTGGGTCCACTATGTTCCCTGGCATTGCCGACAGGATGAGTAAGGAGATCACTGCACTAGCTCCAAGCAGCATGAAGATTAAGGTGGTAGCTCCTCCTGAAAGGAAGTACAGTGTCTGGATAGGAGGATCCATCTTGGCATCCCTCAGCACTTTCCAGCAGGTATTGTGTCTTCTATTGTACATTTACATAAATGATCCACAGGCTCTTGGAGGATGTCTGACTGGAGGATATTATTTTGATTTTGAGTGCAGATGTGGATTGCAAAGGCGGAGTATGATGAGTCTGGTCCGTCAATCGTTCACAGGAAATGCTTCTGATCATGCACCATATGGGGAGATGTGGACGAAGAGAATTATTATATCATGTCCAGTAAAAATTGTGGCTTTCTTTCTTTATTCGCTGTTTTTTTTTTGTTCTCTCTCATTTTAG 1338 0.4791 MADTEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVLCLLLYIYINDPQALGGCLTGGYYFDFECRCGLQRRSMMSLVRQSFTGNASDHAPYGEMWTKRIIISCPVKIVAFFLYSLFFFCSLSF* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00220 445 Pfam Actin 5 357 IPR004000 -
Eupl01g00220 445 SUPERFAMILY Actin-like ATPase domain 149 357 IPR043129 -
Eupl01g00220 445 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Eupl01g00220 445 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Eupl01g00220 445 Gene3D - 10 358 - -
Eupl01g00220 445 FunFam Major actin 260 340 - -
Eupl01g00220 445 FunFam Actin, muscle 182 273 - -
Eupl01g00220 445 SMART actin_3 7 377 IPR004000 -
Eupl01g00220 445 FunFam Actin, alpha skeletal muscle 3 167 - -
Eupl01g00220 445 Gene3D Actin; Chain A, domain 4 182 273 - -
Eupl01g00220 445 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Eupl01g00220 445 PRINTS Actin signature 51 62 IPR004000 -
Eupl01g00220 445 PRINTS Actin signature 28 37 IPR004000 -
Eupl01g00220 445 PRINTS Actin signature 117 130 IPR004000 -
Eupl01g00220 445 PRINTS Actin signature 63 85 IPR004000 -
Eupl01g00220 445 PRINTS Actin signature 142 161 IPR004000 -
Eupl01g00220 445 PRINTS Actin signature 238 254 IPR004000 -
Eupl01g00220 445 Gene3D - 140 340 - -
Eupl01g00220 445 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Eupl01g00220 445 PANTHER ACTIN 9 359 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00220 Eupl-Chr1 7082749 7085384 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00220 1 357 Cytoskeleton Gene Families AT5G09810 96.919 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00220 K10355 - csv:101214247 722.235