Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00189 ATGTCCTCAACAAACCTACCGGAGCCGGCTAACGGCGTTGGGCTCGGTTACGGCATCGCCATCGCAGTTGGCATTCTCGTCCTCATCTCCACCATCATGCTCGCTTCCTACGTCTGCGTTAGAGTCAAAGCTGGTGGCGGCGATGGAGGTGGCGGTAGTGGTGGTGCCAACAACCACCATCACCAAGACTCTACTGGGCCCACACCAGAACCTATCGTGGTGGTTGGTTTGGACGGGCCCACCATAGACTCGTATCCGAAGGTGATATTGGGAGAGAGCCGGCGACTACCTAGACCCAACAACGATCCATGTTCTATATGTTTGACGGATTACCGGTCCAAGGAAGCACTAAGATGTATGCCCGACTGCAACCATTGCTTCCATGCTGATTGCATCGATGAGTGGCTTCGGATGAGCCCCACGTGTCCACTCTGCCGTAATTCGCCAGCTCCATCTACGGTTCCCACTCCTTTGGCTACTCCTCTGTCGGAGTTAGTGCCGCTGGCCTTTCATGCCAGGTGA 522 0.5556 MSSTNLPEPANGVGLGYGIAIAVGILVLISTIMLASYVCVRVKAGGGDGGGGSGGANNHHHQDSTGPTPEPIVVVGLDGPTIDSYPKVILGESRRLPRPNNDPCSICLTDYRSKEALRCMPDCNHCFHADCIDEWLRMSPTCPLCRNSPAPSTVPTPLATPLSELVPLAFHAR* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00189 173 CDD RING-H2_EL5-like 104 146 - -
Eupl01g00189 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 151 IPR013083 -
Eupl01g00189 173 SMART ring_2 104 145 IPR001841 -
Eupl01g00189 173 SUPERFAMILY RING/U-box 98 152 - -
Eupl01g00189 173 Pfam Ring finger domain 104 146 IPR001841 -
Eupl01g00189 173 PANTHER RING-H2 FINGER PROTEIN ATL67 4 171 IPR044289 GO:0016567|GO:0016740
Eupl01g00189 173 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Eupl01g00189 173 MobiDBLite consensus disorder prediction 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00189 Eupl-Chr1 6071516 6072192 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00189 9 173 C3H Transcription Factor Family AT5G07040 63.030 2.71e-70 208
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00189 - - psom:113334623 257.299