Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00174 ATGACTCGGGCAAATGCACTGCGAATATCATGTAATTTGAACAATGCAGCTTGTAAACTTAAAATGGAAGAGTATGTCGAAGCTTCGAGATTGTGTACAAAGGTCTTAGAACTTGACTCATTCAATGTAAAGGCTCTATATAGAAGATCTCAGTCGTACATACGAATGTCCGATTTAGAAAAAGCGGAGATTGACATTAAGAGAGCTCTTAAAATTCATCCAAACAACAGAGATGTGAAGCTTGAGTACAGTAAGTTAAAAGATAAGCAAAAGGAGTACACCAAATATCAAGCTGAGATTTTTGGCACCATGTTTCCAAGGATGAGCCAATTGAAGATCTAG 342 0.3713 MTRANALRISCNLNNAACKLKMEEYVEASRLCTKVLELDSFNVKALYRRSQSYIRMSDLEKAEIDIKRALKIHPNNRDVKLEYSKLKDKQKEYTKYQAEIFGTMFPRMSQLKI* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00174 113 SUPERFAMILY TPR-like 5 104 IPR011990 GO:0005515
Eupl01g00174 113 PANTHER ARYL HYDROCARBON RECEPTOR INTERACTING PROTEIN RELATED 3 110 IPR039663 -
Eupl01g00174 113 Pfam Tetratricopeptide repeat 44 76 IPR013105 -
Eupl01g00174 113 SMART tpr_5 43 76 IPR019734 GO:0005515
Eupl01g00174 113 SMART tpr_5 9 42 IPR019734 GO:0005515
Eupl01g00174 113 Gene3D Tetratricopeptide repeat domain 1 106 IPR011990 GO:0005515
Eupl01g00174 113 ProSiteProfiles TPR repeat profile. 43 76 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00174 Eupl-Chr1 5678032 5678530 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00174 3 112 Calmodulin-binding Proteins AT3G25230 57.273 5.73e-39 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00174 - - nnu:104588271 187.578