Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00171 ATGAGGAAGAAGCTCGACACCCGGTTCCCGGCCTCTCGTATTAAGAAGATAATGCAAGCAGATGAGGATGTTGGGAAGATTGCGATGGCTGTGCCCCTTTTAGTTTCTAAAGCATTGGAACTATTTCTGCAAGATCTCTGTGATCGTACATATGACATAACCCTTCAAAGAGGAGCAAAGACCATGAGTTCTTTGCATTTAAAACAGTGTGTACAAAGCTTCAATGTGTTTGATTTCCTGAGGGAAATTGTTAGCAAGGTTCCAGATTTAGGTGGTTCCGATGCAGCTGGTGAGGAAAGATCTGTTGCTAAGAGAAGGAAAGCTGCAGATGACGATGACAATGAAAGTGATGAGGAGGCGAAGAGAAGCAGGACGCATGAGACGGGCCACAGCAGTAGCAGCACTGGCAGAGGTCGAGGGAGGGGCCGAGGAAGAGGCCGTGGGCGAGGCAGCCGGGCAGTAGAGAGAGAAAGTGCCCAATTTGAGAAGTGTGAAGATGATCCAGACATGTCTCCTCAACGCGACAAGCAGATCCTGAACCCTGAAAGGCTGGATAATGGGTTTGAGGCCAAAGAATCCAAGGAGAATATGGCAGTTGGTAGTAGTACCAATGCAGTGGTGCGTAATTTTGATCTGAATGTGGTCTTGGATGAGGGCGGAGGCTCATCGGCCGTGACAGCGGCAGCCCCTGCCGCATCAACAGAGCCTCCTGAGATGAAGCATGAGGAGTATCCAGGTTGGTCCATCTCTGACATGGACAAGATGGCCATTGACCCTCTTCAGCTTGCTCACCTTAACAGAAGGTTAGATGAGGATGAGGAAGACTATGATGAAGAAGGATAG 843 0.4923 MRKKLDTRFPASRIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYDITLQRGAKTMSSLHLKQCVQSFNVFDFLREIVSKVPDLGGSDAAGEERSVAKRRKAADDDDNESDEEAKRSRTHETGHSSSSTGRGRGRGRGRGRGRGSRAVERESAQFEKCEDDPDMSPQRDKQILNPERLDNGFEAKESKENMAVGSSTNAVVRNFDLNVVLDEGGGSSAVTAAAPAASTEPPEMKHEEYPGWSISDMDKMAIDPLQLAHLNRRLDEDEEDYDEEG* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00171 280 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Eupl01g00171 280 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 121 - -
Eupl01g00171 280 MobiDBLite consensus disorder prediction 226 245 - -
Eupl01g00171 280 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Eupl01g00171 280 MobiDBLite consensus disorder prediction 148 192 - -
Eupl01g00171 280 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Eupl01g00171 280 FunFam dr1-associated corepressor homolog 1 86 - -
Eupl01g00171 280 MobiDBLite consensus disorder prediction 98 128 - -
Eupl01g00171 280 MobiDBLite consensus disorder prediction 90 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00171 Eupl-Chr1 5611315 5632557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00171 1 269 CCAAT-HAP5 Transcription Factor Family AT3G12480 47.440 1.45e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Eupl01g00171 CBFD_NFYB_HMF 9.7e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00171 K21752 - nnu:104588273 371.318