Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00157 ATGTCGAGCAATGGAAACACGCATTGGTGTTACAGATGCAGGCGTCCTATTCGTCTCCGGGGGCGGGATGCACTTTGCCCAAATTGTGATTTAGGCTTCGTGCAAGAACTCAGCGAGGTGGAGGGCATTGGCGGCATTGGCCCGCTAGATTTCTTCGGATTAGATTCCGACGATGATCGGGATCAGAGGTTTGGATTAATAGAAGCATTCTCATCTATGATGAGGCAGCGATTAGCGGGTAGAAACCGTGACCTTGATATCAGAGGGAGATCTGCTATGGTTCCCGAACATGGTAGTATGGGATTCGGTTCTGGTCCTTGGTTGATCTTCAGTGGCCAGATCCCTGTGCGGATGTCCGAGACCGGTGGGATTGAAGTCCTTCTCAATGGCGGTCCTGGAGTTGGATTGAGGCGAGCTAATGTCAGCGATTACTTTGTGGGCCCGGGACTGGATGAACTTATCGAACAGCTCACTAGGAACGACCGGCGGGGGCCGCCACCAGCAGCTCGGTCTTCAATCGATGCGATGCCCACGGTAAAGATCTCGCAAAGGCATCTCCGCTTAGATTCACACTGCCCTGTTTGTAAAGAAAGATTCGAGTTGGGATCCGAAGCACGGGAGATGCCGTGTAACCATATGTATCACTCCGATTGTATCGTCCCATGGTTGGTTCAGCACAACTCATGCCCCGTCTGCCGACTCGAACTGCCACCACAGGGATCCAGTAGTACTCGTAGTAATCAGAGTTCGAGTGGGGGCAGCAGAAGTGGCACTACTAGTAGTAACACCAGTACGAGGGAGAACCGTTCAGAGCATCAGGGGAGGCGTAATCCCTTCTCCTTCTTGTGGCCTTTCCACCGCTCATCAAACTCGAACTCAAACTCGAACTCGAACTCGAACTCGAACTCAAACTCAAACCCGAACCCGAACTCGAATGCTCACCACAGTGAATCAAGCAGAAGCAGCTCAGCGGCCATGCACGAAGATAATCACCAGATGAACTATTCTGGATGGCCTTTTGATTAG 1026 0.5185 MSSNGNTHWCYRCRRPIRLRGRDALCPNCDLGFVQELSEVEGIGGIGPLDFFGLDSDDDRDQRFGLIEAFSSMMRQRLAGRNRDLDIRGRSAMVPEHGSMGFGSGPWLIFSGQIPVRMSETGGIEVLLNGGPGVGLRRANVSDYFVGPGLDELIEQLTRNDRRGPPPAARSSIDAMPTVKISQRHLRLDSHCPVCKERFELGSEAREMPCNHMYHSDCIVPWLVQHNSCPVCRLELPPQGSSSTRSNQSSSGGSRSGTTSSNTSTRENRSEHQGRRNPFSFLWPFHRSSNSNSNSNSNSNSNSNSNPNPNSNAHHSESSRSSSAAMHEDNHQMNYSGWPFD* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00157 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 155 239 IPR013083 -
Eupl01g00157 341 SMART ring_2 192 232 IPR001841 -
Eupl01g00157 341 Pfam Ring finger domain 191 233 IPR001841 -
Eupl01g00157 341 SUPERFAMILY RING/U-box 172 239 - -
Eupl01g00157 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 138 237 - -
Eupl01g00157 341 MobiDBLite consensus disorder prediction 238 341 - -
Eupl01g00157 341 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Eupl01g00157 341 MobiDBLite consensus disorder prediction 283 330 - -
Eupl01g00157 341 MobiDBLite consensus disorder prediction 238 267 - -
Eupl01g00157 341 CDD RING-H2_RNF126-like 192 233 - -
Eupl01g00157 341 ProSiteProfiles Zinc finger RING-type profile. 192 233 IPR001841 -
Eupl01g00157 341 FunFam E3 ubiquitin-protein ligase RING1-like 156 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00157 Eupl-Chr1 5193377 5195858 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00157 139 237 C3H Transcription Factor Family AT5G01980 50.495 3.20e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00157 K11982 - ming:122087365 452.595