LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl01g00156	ATGGCTATCTCATTCTCCGATCTCCACTCAGAAACCGGCCTTAAATCCCTCGAAGAATACCTCTCTGGAAAAACTTATATCTCCGGGGATCAACTAAGTAGAGACGATATTAAGGTTTTTGCGGCAGTTTTAGGGAACCCTGGCGATGCTTTTCCAAATGCGAGTCGGTGGTACGAGTGTGTTTCTTCGCATCTCTCCGCAAGGTTCCCTGGCAAGGCTATCGGGGTGAAAATAGGTGGCGAAGCCGCTCCAACGGAACCTGCTCCTGCTGAGGAAGCTAAAAAGGAGGCTGCGGAGGAAGATGATGATGACTTAGATCTCTTTGGTGATGAGACGGAGGAGGATAAGAAGGCAGCAGAGGCGAGGGAGGCAGCTGTTAAAGCGTCATCCAAGAAGAAAGAGAGTGGGAAATCCTCTGTTCTTTTGGATGTGAAACCTTGGGATGATGAGACCGACATGAAGAAGCTGGAAGAGATCGTCCGCAGCATCGAGATGCCTGGTCTCTTCTGGGGAGCATCAAAACTGGTTGCCGTCGGTTATGGCATAAAGAAGCTGCAAATCATGATGACCATTGTAGATGATCTTGTCTCAGTGGACACACTGATTGAGGAGTGCCTCACGGTCGAGCCTGCAAACGAGTACATACAGAGCTGCGATATTGTAGCTTTCAACAAAATCTGA	681	0.489	MAISFSDLHSETGLKSLEEYLSGKTYISGDQLSRDDIKVFAAVLGNPGDAFPNASRWYECVSSHLSARFPGKAIGVKIGGEAAPTEPAPAEEAKKEAAEEDDDDLDLFGDETEEDKKAAEAREAAVKASSKKKESGKSSVLLDVKPWDDETDMKKLEEIVRSIEMPGLFWGASKLVAVGYGIKKLQIMMTIVDDLVSVDTLIEECLTVEPANEYIQSCDIVAFNKI*	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl01g00156	226	Gene3D	-	3	73	-	-
	Eupl01g00156	226	CDD	EF1B	140	226	IPR014038	GO:0003746\|GO:0006414
	Eupl01g00156	226	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	215	226	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Eupl01g00156	226	Gene3D	-	130	226	IPR014717	-
	Eupl01g00156	226	MobiDBLite	consensus disorder prediction	79	108	-	-
	Eupl01g00156	226	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	8	226	-	-
	Eupl01g00156	226	FunFam	Elongation factor 1-beta 1 like	131	226	-	-
	Eupl01g00156	226	Pfam	EF-1 guanine nucleotide exchange domain	139	226	IPR014038	GO:0003746\|GO:0006414
	Eupl01g00156	226	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	101	109	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Eupl01g00156	226	SMART	EF1_GNE_2	137	226	IPR014038	GO:0003746\|GO:0006414
	Eupl01g00156	226	SUPERFAMILY	eEF-1beta-like	134	226	IPR036219	-
	Eupl01g00156	226	SUPERFAMILY	GST C-terminal domain-like	11	65	IPR036282	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl01g00156	Eupl-Chr1	5173723	5179828	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl01g00156	1	226	Eukaryotic Initiation Factors Gene Family	AT5G12110	73.246	4.44e-109	311

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl01g00156	K03232		-	msin:131250928	304.293