Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00147 ATGGGTGGAGAAGAGAACGAAGGGCCGATCTTCAGAGACATCAGGCGTTACTACTGCGAGTACTGCGGCATTTGCAGGTCGAAGAAATCTCTGATCACCTCTCACGTCGAAGCCCAACATAAGGAAGAGATTGAAGAGAAAAGACTTGATGGGGATGAGGATATAGAGGAAACAAAGTCAAATACTTGTGAAGAGTGTGGTGCAAGTTTTCGGAAACCGGCTTATTTAAAGCAACATATGCAAAGCCATTCACTTGAGAGGCCTTTTGCTTGTACAGTAGACGACTGCCATTTGAGCTACAGAAGAAAAGACCACTTGACTCGGCATTTGCTCCAGCACCAGGGGAAACTCTTCTCTTGCCCTGTTGAAAACTGCAACCGTAGGTTTGCTTTCCAGGCTAACATGAAGCGGCATGTGAAGGAACTTCATGATGAAGAAGAACCTCCCTCGTGCGATGGCGGGGGCCAGAAGCAGCATGTTTGCCAGGAAGCTGGGTGTGGGAAGGTGTTTAAATTTGCATCGAAACTGCAGAAGCACGAGGATTCTCATGTTAAACTGGATTCTGTGGAGGCAATTTGCTCTGAACCTGGCTGTCTCCAACACTTCACCAATGTTGAATGTCTTAAAGCCCATCTCCAGTCCTGCCATCAATATGTTCCTTGTGAGGTCTGTGGGACCAAGCAGCTGAAGAAAAACATCAAACGGCACCTGCGCACACACAATGCTGCATCGGCTGAGAGGATCAAATGCAGTTTCAAGGGTTGCCTTCACACATTCTCAACAAAATCAAATGTCAACCATCACATAAAGGCTGTGCACTACGAGCTCCGACCATTTGCTTGTCGAATTTCCGGGTGTGGAAAGAAGTTCCCATACAGGCATGTGAGGGACAACCATGAGAAAACTGGGACACATGTTTATAGCCAGGGGGATTTTGAGGAGTTTGACGAACAGTTCCGATCAAGGCCGAGGGGTGGTCGTAAAAGGCAGTGCCCAACAGTTGAGACTCTGCTAAGGAAGAGGGTTGCCCCACCTAGTCAGGGAGATTCTGTTTTGAACCAGGTACCTGAGTACCTCTCTTGGTTACTTTCAGGGGCTGCGGAGTAA 1107 0.4806 MGGEENEGPIFRDIRRYYCEYCGICRSKKSLITSHVEAQHKEEIEEKRLDGDEDIEETKSNTCEECGASFRKPAYLKQHMQSHSLERPFACTVDDCHLSYRRKDHLTRHLLQHQGKLFSCPVENCNRRFAFQANMKRHVKELHDEEEPPSCDGGGQKQHVCQEAGCGKVFKFASKLQKHEDSHVKLDSVEAICSEPGCLQHFTNVECLKAHLQSCHQYVPCEVCGTKQLKKNIKRHLRTHNAASAERIKCSFKGCLHTFSTKSNVNHHIKAVHYELRPFACRISGCGKKFPYRHVRDNHEKTGTHVYSQGDFEEFDEQFRSRPRGGRKRQCPTVETLLRKRVAPPSQGDSVLNQVPEYLSWLLSGAAE* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00147 368 Gene3D Classic Zinc Finger 90 114 - -
Eupl01g00147 368 ProSitePatterns Zinc finger C2H2 type domain signature. 250 273 IPR013087 -
Eupl01g00147 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 310 IPR013087 -
Eupl01g00147 368 Gene3D Classic Zinc Finger 155 241 - -
Eupl01g00147 368 Gene3D Classic Zinc Finger 243 323 - -
Eupl01g00147 368 Gene3D Classic Zinc Finger 10 89 - -
Eupl01g00147 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 248 278 IPR013087 -
Eupl01g00147 368 SMART c2h2final6 248 273 IPR013087 -
Eupl01g00147 368 SMART c2h2final6 219 240 IPR013087 -
Eupl01g00147 368 SMART c2h2final6 17 40 IPR013087 -
Eupl01g00147 368 SMART c2h2final6 191 216 IPR013087 -
Eupl01g00147 368 SMART c2h2final6 118 143 IPR013087 -
Eupl01g00147 368 SMART c2h2final6 89 113 IPR013087 -
Eupl01g00147 368 SMART c2h2final6 279 305 IPR013087 -
Eupl01g00147 368 SMART c2h2final6 159 183 IPR013087 -
Eupl01g00147 368 SMART c2h2final6 61 83 IPR013087 -
Eupl01g00147 368 ProSitePatterns Zinc finger C2H2 type domain signature. 281 305 IPR013087 -
Eupl01g00147 368 ProSitePatterns Zinc finger C2H2 type domain signature. 161 183 IPR013087 -
Eupl01g00147 368 PANTHER ZINC FINGER PROTEIN 4 364 - -
Eupl01g00147 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 118 IPR013087 -
Eupl01g00147 368 Pfam Zinc finger, C2H2 type 62 83 IPR013087 -
Eupl01g00147 368 Pfam Zinc finger, C2H2 type 159 183 IPR013087 -
Eupl01g00147 368 Pfam Zinc finger, C2H2 type 118 143 IPR013087 -
Eupl01g00147 368 Pfam Zinc finger, C2H2 type 89 113 IPR013087 -
Eupl01g00147 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 148 IPR013087 -
Eupl01g00147 368 SUPERFAMILY beta-beta-alpha zinc fingers 155 185 IPR036236 -
Eupl01g00147 368 Gene3D Classic Zinc Finger 115 154 - -
Eupl01g00147 368 ProSitePatterns Zinc finger C2H2 type domain signature. 91 113 IPR013087 -
Eupl01g00147 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
Eupl01g00147 368 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Eupl01g00147 368 SUPERFAMILY beta-beta-alpha zinc fingers 230 290 IPR036236 -
Eupl01g00147 368 ProSitePatterns Zinc finger C2H2 type domain signature. 120 143 IPR013087 -
Eupl01g00147 368 FunFam Zinc finger 45-like 59 84 - -
Eupl01g00147 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 159 188 IPR013087 -
Eupl01g00147 368 SUPERFAMILY beta-beta-alpha zinc fingers 99 153 IPR036236 -
Eupl01g00147 368 SUPERFAMILY beta-beta-alpha zinc fingers 60 113 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00147 Eupl-Chr1 4840158 4844422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00147 85 308 C2H2 Transcription Factor Family AT1G72050 50.725 1.87e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Eupl01g00147 zf-C2H2 0.0089 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00147 K09191 - nnu:104593605 601.668