Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00146 ATGGCGTCAAGACCTACTGTTTCAGAGCAACCAAGATGTGGAGCAGTTGCAGGGAAGACCGGTTTAGCCAAAGAAAATAACCGGCGAGCGCTTGAAGATATTGGGAATTTTGTTAATGTTCGAGCCGACGAAGCGAAGCCTCAGCAGGAGTTACCTCGCCTCGTAACAAGGAGTTTTTGTGCACAATCACAGACCAATGCTGAAGCTGCTGCAGCAGAAAATAAAAAGAAACCTGTTAAAGTAGTTGATGGAGCTGTTGTGGGAAAAGGCGGTGTTGAGACAAAGCTAGATCAAAAGAAGGTTACCTTTAAGCCGACACCTGACGTGATAATTGATATAAGCTCTGATAGAGAAGAAGAGACTAGAAAGGAGAAATTTAAGCCAGTTCATGTAGTTGATAATGAAGCCGGGGTCGGAAAAGGAGACGCTGTGACAAAGGCAGCTCAAAAGAAGGTTACTGTTAAGCTGAAACCTGAGACAATAATCGAAATTAGCTCGGATAGAGAAGAGAGGACTAAACAGGAGAAGTCCATAAGTAGGAAAGGGTCCTCAAGGAAGAAAGTTCAGACCCTCACTTCAGTCCTAACTGCTCGAAGCAAGTATGCTTGTGGTCTGACTCATAAACCAGAGGATCCCGTTTCCGACATCGATGCAGCAGATGTTGGTAATGAGTTGGCAGTAGTGGACTATGTTGAAGATCTATACAAGTTTTACAAGCTCACAGAGAACTCGAGTCGAGTTCATGATTACATGAAGTCACAACCTGATATTAATGAACAGATGAGAGCAATTCTCATGGACTGGTTAATAGATGTTCACAAAAAGTTTGAACTCATGCCTGAAACTCTCTATCTTACCCTCCATATAGTTGATCGATTCCTTTCGGTGAAAACAATCAGAAAGATGGAGATGCAGTTAGTTGGCATAAGTGCTATGCTTATTGCCAGCAAGTATGAGGAAATGTGGGCTCCAGAGGTTGATGACTTTATCTGCATATCGGACATGGCGTACACTCGAGAAAAGATATTGGCCATGGAGAAAGAAATTTTGGGCAAGCTCGAATGGAGCTTAACCTTCCCAACACCTTATGTATTCCTCGTCCGTTTTATCAAAGCTGCTCTGTCTGACAAGGAGATGGAAAACTTGGTCTTCTATCTGGCAGAGCTCGGTGTGATGCACTACGCGACGATAATATACTGCCCATCAATGATAGCTGCTTCAGCAGTCTATGCTGCACAGTGTACACTGAACAAGAGCCCTCTTTGGAGCGAAACTCTTAAGCTCTACACGGGTTTCTCTGAACCACAGCTTATGTCTGTCCTCTTCCCTTCCTTTTTCCTACCATATTTATGTCTATGGGTATTAATAGAACCCTGCGATTACGCCCTCTCCACATCTCCATCGGACAGTGCTGATCGTGGCACCGTGGATAGACTCATCCCTCTCTTTTGCTAA 1455 0.4412 MASRPTVSEQPRCGAVAGKTGLAKENNRRALEDIGNFVNVRADEAKPQQELPRLVTRSFCAQSQTNAEAAAAENKKKPVKVVDGAVVGKGGVETKLDQKKVTFKPTPDVIIDISSDREEETRKEKFKPVHVVDNEAGVGKGDAVTKAAQKKVTVKLKPETIIEISSDREERTKQEKSISRKGSSRKKVQTLTSVLTARSKYACGLTHKPEDPVSDIDAADVGNELAVVDYVEDLYKFYKLTENSSRVHDYMKSQPDINEQMRAILMDWLIDVHKKFELMPETLYLTLHIVDRFLSVKTIRKMEMQLVGISAMLIASKYEEMWAPEVDDFICISDMAYTREKILAMEKEILGKLEWSLTFPTPYVFLVRFIKAALSDKEMENLVFYLAELGVMHYATIIYCPSMIAASAVYAAQCTLNKSPLWSETLKLYTGFSEPQLMSVLFPSFFLPYLCLWVLIEPCDYALSTSPSDSADRGTVDRLIPLFC* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00146 484 Pfam Cyclin, N-terminal domain 234 357 IPR006671 -
Eupl01g00146 484 MobiDBLite consensus disorder prediction 166 185 - -
Eupl01g00146 484 Gene3D - 233 440 - -
Eupl01g00146 484 FunFam G2/mitotic-specific cyclin 246 358 - -
Eupl01g00146 484 Gene3D - 247 358 - -
Eupl01g00146 484 MobiDBLite consensus disorder prediction 166 182 - -
Eupl01g00146 484 CDD CYCLIN_AtCycB-like_rpt1 210 355 - -
Eupl01g00146 484 MobiDBLite consensus disorder prediction 1 21 - -
Eupl01g00146 484 SUPERFAMILY Cyclin-like 359 441 IPR036915 -
Eupl01g00146 484 PIRSF Cyclin_A_B_D_E 2 442 IPR046965 GO:0016538|GO:0044772
Eupl01g00146 484 SUPERFAMILY Cyclin-like 222 357 IPR036915 -
Eupl01g00146 484 ProSitePatterns Cyclins signature. 262 293 IPR006671 -
Eupl01g00146 484 PANTHER CYCLINS 175 426 IPR039361 -
Eupl01g00146 484 Pfam Cyclin, C-terminal domain 360 439 IPR004367 -
Eupl01g00146 484 SMART cyclin_7 267 351 IPR013763 -
Eupl01g00146 484 SMART cyclin_7 364 446 IPR013763 -
Eupl01g00146 484 SMART Cyclin_C_2 360 482 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00146 Eupl-Chr1 4835232 4838294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00146 1 456 Core Cell Cycle Gene Families AT3G11520 44.858 9.54e-118 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00146 K21777 - nnu:104607861 488.419