Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00143 ATGGCTGTGGCGGCCCCTGGGCAGCTCAATCTCTACGAGTGCCCTACGTTGGGATCTCGAAGCGTCGACTGTTTCGAGAAATTGGAGCAGATTGGTGAAGGCACATATGGTCAAGTCTACATGGCTAGAGAAATCAAGACGGGGGAAATTGTTGCTTTGAAAAAGATACGGATGGACAATGAAAGAGAAGGATTTCCAATAACTGCCATACGTGAGATTAAAATTCTAAAGAAGCTGCATCATGATAATGTGCTTAAGTTGAAAGAGATTGTAACCTCTTCAGGTCCTGAAAAGGATGAACCAGGGAGGTCAGCAGATGGTAACAAGTACAAAGGTGGCATCTACATGGTTTTTGAATACATGGACCATGATTTGACAGGTCTTTCCGATCGTCCTGGGATGCGATTTTCAGTTCCCCAGATCAAGTGCTATATGAGGCAGCTACTGACAGGGCTTCATTACTGTCATGTTAATCAAGTACTTCATCGTGACATCAAAGGCTCTAATCTTCTAATAGATAATGAGGGAAATCTGAAGCTTGCAGATTTTGGTCTTGCAAGATCGTTCTCCAATGACCACAATGGAAATCTCACAAATCGGGTTATTACTTTGTGGTATAGACCTCCAGAATTGCTGCTGGGAACCACAAAATATGGTCCGTCTGTTGACATGTGGTCCGTGGGTTGTATCTTTGCAGAGCTTCTGCAAGGAAAACCAATCTTGCCTGGAAAAGATGAGCCAGAGCAATTGAACAAGATTTTTGAGCTGTGTGGAGCTCCTGATGAGGGCAGCTGGCCTGGGGTTTCCAAGTTTCCTTGGTATAACAATTTCAAACCAACAAGGCCAATGAAGAGACGAGTTAGGGAGATTTTCAGACAATATGACCGCCATGCTGTTGAGTTACTGGAGCGAATGCTGACTCTTGATCCATCTCAGAGAATATCTGCAAAGGATGCTCTTGATGCTGAGTATTTCTGGACTGATCCCTTACCTTGTGATCCCAAGAGTTTACCTAAATACGAATCGTCCCATGAGTTCCAGACAAAGAAAAAGCGCCAACAACAGAGACAACATGAAGAAACAGCTAAGCGGCAGAAGCTGCAGCACGCACAGCAGCACACACGCGTACCTCCCATCCAACAAACTGGGCAGGTGCACCCTCAACTGCGGCCAGGACCTAACCAGCCCATGCATAATTCCCAGCCTACAGTGGTTGCAGGACCTAGCCACCACTATGGAAAGCCTCGTGGACCCTCTGGAGGGCAAAATAGATACCAACAGAGCGGAAACCCTAGTGCAGGATACAACCAAAATCGTGGAGGTCAAGGTGGAGGTTACAGTGGCGGGCCGTATCCACCACCACAAGGACGAGGGGCTCCTTATGCTGCAAGTGGTATGCCTGGTACAGGTCCCCGAGGTGGTGGCAGTGGTTATGGATTCAGTGCTTCAAATTACCCTCAAGGCGGTCCATATGGAGGTTCAGGTGCTGGTCGAGGCCCAAACATGATGGGTGGTAAATCGCATCCGCCGTATGGTTGGCAGCAGTAA 1548 0.4761 MAVAAPGQLNLYECPTLGSRSVDCFEKLEQIGEGTYGQVYMAREIKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHDNVLKLKEIVTSSGPEKDEPGRSADGNKYKGGIYMVFEYMDHDLTGLSDRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNGNLTNRVITLWYRPPELLLGTTKYGPSVDMWSVGCIFAELLQGKPILPGKDEPEQLNKIFELCGAPDEGSWPGVSKFPWYNNFKPTRPMKRRVREIFRQYDRHAVELLERMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHAQQHTRVPPIQQTGQVHPQLRPGPNQPMHNSQPTVVAGPSHHYGKPRGPSGGQNRYQQSGNPSAGYNQNRGGQGGGYSGGPYPPPQGRGAPYAASGMPGTGPRGGGSGYGFSASNYPQGGPYGGSGAGRGPNMMGGKSHPPYGWQQ* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00143 515 FunFam Cyclin-dependent kinase C-2 123 365 - -
Eupl01g00143 515 Pfam Protein kinase domain 25 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl01g00143 515 MobiDBLite consensus disorder prediction 371 406 - -
Eupl01g00143 515 MobiDBLite consensus disorder prediction 336 515 - -
Eupl01g00143 515 CDD STKc_CDK9_like 25 325 - -
Eupl01g00143 515 SUPERFAMILY Protein kinase-like (PK-like) 19 333 IPR011009 -
Eupl01g00143 515 MobiDBLite consensus disorder prediction 338 367 - -
Eupl01g00143 515 ProSiteProfiles Protein kinase domain profile. 25 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl01g00143 515 SMART serkin_6 25 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Eupl01g00143 515 MobiDBLite consensus disorder prediction 420 443 - -
Eupl01g00143 515 PANTHER CELL DIVISION PROTEIN KINASE 23 331 - -
Eupl01g00143 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Eupl01g00143 515 Gene3D Phosphorylase Kinase; domain 1 13 122 - -
Eupl01g00143 515 ProSitePatterns Protein kinases ATP-binding region signature. 31 54 IPR017441 GO:0005524
Eupl01g00143 515 FunFam Cyclin-dependent kinase C-2 12 122 - -
Eupl01g00143 515 Gene3D Transferase(Phosphotransferase) domain 1 123 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00143 Eupl-Chr1 4778052 4789228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00143 1 492 Core Cell Cycle Gene Families AT5G10270 77.465 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Eupl01g00143 Pkinase 2.9e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00143 K08819 - nnu:104587804 894.034