Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00131 ATGGGTCGTGCAAAAATCAATATGGAGCTCATACCTAAAGAGAAATCTCGAAATTTGACTTTTCTCAAGAGAAGGAATGGGTTGAAGAAGAAGATTTTTGAATTTTCAACTCTCTGTGGAGTTGATGCGTGCATGATAGTGTATGGACCGAAACAAGGTGACCGTCCGATTGAGCTAGATGTATGGCCGAAGAACCAAGATGAAGTCAATCGGATCATCAATCGGTACCAACAGACAGGAAAGGATGAACGGAGGAAGAGAAACCTTGATCTTTCTGATATCTTTAAGGAATGTAAAAAGAAGACTGAAGATGAACTTGCTAAAGTGCGTAGGAAGAACAATGTGGCTGAGAACCTTACGTGGGACGACCAGATCCATGATTTCACGGAGGAGCAACTGAGACAACTTCTAGGCAAATTGGACTCCAAGCTTGATATGGTGAAGACAAGAATTGAATTCATGAAGGGGAAGGGGAAGGGGAAGCAACTCTTCCCGGAAGGAGTAGCAGGAGCAGGGATGATTGAGTACTCCCACCCACCACCGAATCAAAACCCTTCATGTTATATATCGAGCCCTCATCATGGGAATACGTGGAGCGATGTCATGCAAACACAGCCTCTTGCTTGTGTGAAACCACTGGATCACCATTTTACAGCCATTGATTACACATCTGATTCTGAACCGGGTCTGAGCTTCGATGGCGGACACATGATGAGTTCAACGATGTCGATCAACGGCTTTAATTATGACAATTTCCATGGTGGGTCCATCGGGAACCTTCCTTATTCTTCGTTTGAGGGTCCATATCTTTATGATTCGGGGTTCAGGACATTGGTTGAGACCCAATTCACCAATGTGGGACCGTCTGCGAACTATTTAGCGTCGAACATGCACCCGATGCCACCTTATCTACCGTATCAGATGCCCAGGACTTCACCACAAATGCATCATCAGCCGTTCAATCAGTTATTTGATCTTCAAGATTCTTAG 990 0.4465 MGRAKINMELIPKEKSRNLTFLKRRNGLKKKIFEFSTLCGVDACMIVYGPKQGDRPIELDVWPKNQDEVNRIINRYQQTGKDERRKRNLDLSDIFKECKKKTEDELAKVRRKNNVAENLTWDDQIHDFTEEQLRQLLGKLDSKLDMVKTRIEFMKGKGKGKQLFPEGVAGAGMIEYSHPPPNQNPSCYISSPHHGNTWSDVMQTQPLACVKPLDHHFTAIDYTSDSEPGLSFDGGHMMSSTMSINGFNYDNFHGGSIGNLPYSSFEGPYLYDSGFRTLVETQFTNVGPSANYLASNMHPMPPYLPYQMPRTSPQMHHQPFNQLFDLQDS* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00131 329 Coils Coil 99 119 - -
Eupl01g00131 329 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Eupl01g00131 329 SUPERFAMILY SRF-like 2 97 IPR036879 GO:0003677|GO:0046983
Eupl01g00131 329 PANTHER MADS BOX PROTEIN 3 152 - -
Eupl01g00131 329 SMART madsneu2 1 64 IPR002100 GO:0003677|GO:0046983
Eupl01g00131 329 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Eupl01g00131 329 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Eupl01g00131 329 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Eupl01g00131 329 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Eupl01g00131 329 CDD MADS_SRF_like 2 90 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00131 Eupl-Chr1 4428059 4429812 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00131 6 211 Type I MADS-box Gene Family AT5G58890 30.000 5.43e-21 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl01g00131 SRF-TF 5.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00131 - - ming:122072881 186.808