Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00123 ATGGGTCGATCCCATTCTCGCATCCACCTTCGTGCTCTTCAACTTCTTCAAGCTGTTCAACTTCTTCGAACACAAGATGGGCCGTGCAAAACTCAATATGGAGCCCATACCCAAACTCGAAATGCGACTTTTTTAAAGAGAATGAAAGGGTTGAAAAAGAAGATTTATGAATTCTCCACCCTTTGCGGAGTTGACGCATCCATGATCATGTACGCATCGAAACAAGACAACCGTCTGCTTGAGCCAGAGATATGGCCAGAGAACAAAAATGAAGTCCATCGGATCATCAATCAATATCAACATATAGGGAAGGACAAACGGATGAAGCGAAACCTTGATCTTTCTGACATCATTGAGGATCGGAAGAAGATCAAAGATGAACCCACTAAAGTACGCCGAAACAACAATGAGACTGAGCACCTCATGCGGGACGATTGGATCGATGATTTCACGATGGAGCAACTACAGCAACTTATAGGCACATTGGACTCGAAGCTTGAAATGGTGAAGACGAAAATTGAATTGATGAATGGGAAAAAAAACGCCCTGGAAGGAGTAGCAAGGATGATCGAGCACTCCCACCCAGCACCGAGCACATATCATGGGAATATGTGGAAAGATGTAATGCAAACACATCCTCTTGCTTGTGTGAAACCGCTGGATCACCATATTACAGCCATTGATTACCCTTATGAACCAGGCCTGATCTTTGATGGCAGACACGCGATGACTCCGATGATGTCGATGAATGGCTTTAGTTGCGAAAATTTCCAGGGTGGGTCCATCGGGAACCTTTCTTATTCTTCATTTAACGGTCCATTTATGTATGATTCAGGATTGAGGACATTGGAAGAGATGGAATTCATCAATTAA 873 0.4364 MGRSHSRIHLRALQLLQAVQLLRTQDGPCKTQYGAHTQTRNATFLKRMKGLKKKIYEFSTLCGVDASMIMYASKQDNRLLEPEIWPENKNEVHRIINQYQHIGKDKRMKRNLDLSDIIEDRKKIKDEPTKVRRNNNETEHLMRDDWIDDFTMEQLQQLIGTLDSKLEMVKTKIELMNGKKNALEGVARMIEHSHPAPSTYHGNMWKDVMQTHPLACVKPLDHHITAIDYPYEPGLIFDGRHAMTPMMSMNGFSCENFQGGSIGNLSYSSFNGPFMYDSGLRTLEEMEFIN* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00123 290 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 37 73 IPR002100 GO:0003677|GO:0046983
Eupl01g00123 290 SUPERFAMILY SRF-like 33 120 IPR036879 GO:0003677|GO:0046983
Eupl01g00123 290 ProSiteProfiles MADS-box domain profile. 36 74 IPR002100 GO:0003677|GO:0046983
Eupl01g00123 290 Gene3D - 37 125 IPR036879 GO:0003677|GO:0046983
Eupl01g00123 290 SMART madsneu2 1 87 IPR002100 GO:0003677|GO:0046983
Eupl01g00123 290 Coils Coil 152 172 - -
Eupl01g00123 290 PANTHER MADS BOX PROTEIN 38 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00123 Eupl-Chr1 4293174 4295063 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00123 32 178 Type I MADS-box Gene Family AT1G22590 31.818 3.17e-15 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Eupl01g00123 SRF-TF 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00123 - - ming:122072881 145.976