Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00105 ATGTATCATGCCAAGAAATTTTCGACCATGGGCTTAGTGCCCCATAAGGCCCAGGGTACTGAGCAACTTGCAAATGTTGGTGTCTCGGGGGGATCCTCGGTAAACAATTCAGCTTCTTCTGGGGGAAATGGAAAGCAACGGTTGCGATGGACTTCAGATCTTCATGATCGCTTTGTCGAAGCCATTACACAACTCGGTGGACCCGATAGAGCCACACCAAAAGGCGTACTTAGGGTGATGGGTGTACCCGGACTTACTATTTATCATGTGAAAAGCCACTTGCAGAAATATCGCCTTGCTAAATACCTACCAGAATCTCCAGCTGACGGTTCTAAAGACGAGAAGAAAGATTCTGGCGATAGCCTCTCTAGCATGGATTCTGCCCCTGGAGTACAAATCAACGAGGCACTGAGGATGCAGATGGAAGTGCAAAAGCGCCTACATGAACAGCTTGAGGTGCAAAGGCAGTTGCAGCTGAGAATTGAAGCTCAGGGGAAGTACTTGCAAAAGATCATTGAAGAGCAGCAGAAGCTGGGTGGCGCGCTCAAAGCACCCGAGCCTTCGCTGGTAGTTGGGGAAAAACAAAAGCCATCACCATCGTCTTCTGATGCCCTGGTAGCACCCCAATCTCCTCTCAAGAAGCAGAGGGTGGAGGACGAGTCAACAGATCCGTCCCCTTCTACGAACTTCGTTAGGACAGACAAAAATCCTGACTCGATTGGCCAGTTGGATCGGGATTTGTATGGGAGTAATGTCGCGGGGTTTGTATTTGATGTGGAGACAGGGTTCAAAGAAGGGGAAGATGGTGGGCTGGGTAAGAGAGCGTCGCAAGAGGAAGGGTCCACTCATGTTGCAGGCGGAGGTTCATCTTAG 873 0.5006 MYHAKKFSTMGLVPHKAQGTEQLANVGVSGGSSVNNSASSGGNGKQRLRWTSDLHDRFVEAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPADGSKDEKKDSGDSLSSMDSAPGVQINEALRMQMEVQKRLHEQLEVQRQLQLRIEAQGKYLQKIIEEQQKLGGALKAPEPSLVVGEKQKPSPSSSDALVAPQSPLKKQRVEDESTDPSPSTNFVRTDKNPDSIGQLDRDLYGSNVAGFVFDVETGFKEGEDGGLGKRASQEEGSTHVAGGGSS* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00105 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 42 102 IPR017930 -
Eupl01g00105 290 MobiDBLite consensus disorder prediction 194 208 - -
Eupl01g00105 290 MobiDBLite consensus disorder prediction 222 236 - -
Eupl01g00105 290 MobiDBLite consensus disorder prediction 263 290 - -
Eupl01g00105 290 Gene3D - 44 103 - -
Eupl01g00105 290 Pfam Myb-like DNA-binding domain 48 98 IPR001005 -
Eupl01g00105 290 Pfam MYB-CC type transfactor, LHEQLE motif 131 177 IPR025756 -
Eupl01g00105 290 MobiDBLite consensus disorder prediction 104 129 - -
Eupl01g00105 290 FunFam Myb family transcription factor 44 102 - -
Eupl01g00105 290 SUPERFAMILY Homeodomain-like 45 99 IPR009057 -
Eupl01g00105 290 NCBIfam myb-like DNA-binding domain, SHAQKYF class 45 100 IPR006447 GO:0003677
Eupl01g00105 290 MobiDBLite consensus disorder prediction 189 245 - -
Eupl01g00105 290 MobiDBLite consensus disorder prediction 107 121 - -
Eupl01g00105 290 Coils Coil 134 154 - -
Eupl01g00105 290 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 43 218 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00105 Eupl-Chr1 3480765 3489810 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00105 33 175 G2-like Transcription Factor Family AT4G28610 60.839 1.57e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Eupl01g00105 Myb_DNA-binding 1.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00105 - - nnu:104593509 385.956