Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00102 ATGGCAAAGAAGCGAAAGCTCGAGATCAAATCGGAACCTGAGCCGGTAACCACAGCGGAACAACAACCACAACAAGAAGAAGAGCAAACCCAACTCGATGAAGAAGAAGTCATGGAAGAAGAACAAGAAGAGGACCTCGAAGTGCCCGAAGTAGAAGAGGAGGATGATGAAACTCAAAATACAGATAATACCCTCAATTCTACTGCAGCTGCAGCAGCAGCTACGGCGTCTGCACCGTCAACCACGGACGCCGATGGAGGCGCTGATGACGATGACGATGACGAAGAGGACGAGGACGACTCCGAAGAACCCATCCAGAAGGTTCTAGAACCATTCACCAAAGACCAGCTCACAGATCTCCTCCGCGAAGCAGCCGATAAACACCCTGACATCCTCGATCGCATCCGCAAGCTTGCTGATGTGGACCCTGTCCACCGCAAGGTCTTCGTCCACGGCCTCGGCTGGGACACTAACGCAGAGACTCTCACTAACGCCTTCAAGAAGTACGGTGAGATCGAGGACTGCAACGCTGTATGTGATAAGATCTCTGGAAAATCCAAGGGTTACGGTTTCATCCTCTTCAAGCACCGCAGCGGGGCCCAAAAGGCCCTCAAGCAGCCCCAGAAGCGGATTGGCAATCGGATGACTGCCTGCCAACTTGCTTCTTCGGGCCCGGTCCCACCGCCAGCGCTGGCTGCTGCTCCGGTGTCGGAGTACACACAGCGGAAGATATACGTTAGCAATGTATCAGCTGATATTGATCCTCAGAGGTTGCTTAATTTCTTTGCCAAGTATGGAGAGATCATGGAGGGTCCGTTAGGGTTAGATAAGCAGACTGGGAAGCCCAAGGGGTTCGCTCTTTTTGTCTACAAGACGGCCGAGAGCTCCAAGAAGGCGTTGGAGGAGCCGCACAAGAACTTCGAAGGGCATATCTTGCATTGCCAGAGGGCGATCGACGGTCCAAAGCCAAACAAGTCATACTCCCACCACCATAACCCGCACCACACGCCTGGCGGTGGCCATGGTTCACATTTCTCTAGGAACGAAAACCCTAATTTCATGGGGGGTATGGGGAACCATGCATCAGCTGCTGAGGCGGGGGCTGGGCACATGATGGCACCATCGCAAGCTGGAATGGCGCTCAACCAGGGGGCTGCTCAGTTGAACCCGGTGCTGGGGCAGGCTATAACAGCATTGCTTGCGAGCCAGGGTGGTGGGTTGGGGCTGACAAACCTGCTTGGCTCACTTGGGTCGGCTGGGATGGGGGCACCGAACCAGACTATGCAGCCCATGGTTAACAATGCGGCCCATGGAATGCAGGGTGGGTATGGGAATCCGAGTAATATAAGCCCGGGCATGATGGGCGGTTACGGAAATCAGCATGGGATGCAGGGCGGGTACCAAAACCCTCAAATGGGTCAAGGCAATGCAGGGAGGTCACAGCAGGGCCACATGGGTGGCGTTGGGCCTTACATGGGTCATTAG 1485 0.5488 MAKKRKLEIKSEPEPVTTAEQQPQQEEEQTQLDEEEVMEEEQEEDLEVPEVEEEDDETQNTDNTLNSTAAAAAATASAPSTTDADGGADDDDDDEEDEDDSEEPIQKVLEPFTKDQLTDLLREAADKHPDILDRIRKLADVDPVHRKVFVHGLGWDTNAETLTNAFKKYGEIEDCNAVCDKISGKSKGYGFILFKHRSGAQKALKQPQKRIGNRMTACQLASSGPVPPPALAAAPVSEYTQRKIYVSNVSADIDPQRLLNFFAKYGEIMEGPLGLDKQTGKPKGFALFVYKTAESSKKALEEPHKNFEGHILHCQRAIDGPKPNKSYSHHHNPHHTPGGGHGSHFSRNENPNFMGGMGNHASAAEAGAGHMMAPSQAGMALNQGAAQLNPVLGQAITALLASQGGGLGLTNLLGSLGSAGMGAPNQTMQPMVNNAAHGMQGGYGNPSNISPGMMGGYGNQHGMQGGYQNPQMGQGNAGRSQQGHMGGVGPYMGH* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00102 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 148 211 IPR000504 GO:0003723
Eupl01g00102 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 312 IPR000504 GO:0003723
Eupl01g00102 494 MobiDBLite consensus disorder prediction 61 82 - -
Eupl01g00102 494 MobiDBLite consensus disorder prediction 85 104 - -
Eupl01g00102 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 318 IPR000504 GO:0003723
Eupl01g00102 494 MobiDBLite consensus disorder prediction 471 494 - -
Eupl01g00102 494 Gene3D - 233 352 IPR012677 -
Eupl01g00102 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 146 223 IPR000504 GO:0003723
Eupl01g00102 494 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 23 337 - -
Eupl01g00102 494 SMART rrm1_1 243 315 IPR000504 GO:0003723
Eupl01g00102 494 SMART rrm1_1 147 219 IPR000504 GO:0003723
Eupl01g00102 494 Gene3D - 138 225 IPR012677 -
Eupl01g00102 494 MobiDBLite consensus disorder prediction 319 361 - -
Eupl01g00102 494 MobiDBLite consensus disorder prediction 1 112 - -
Eupl01g00102 494 SUPERFAMILY RNA-binding domain, RBD 230 347 IPR035979 GO:0003676
Eupl01g00102 494 SUPERFAMILY RNA-binding domain, RBD 145 229 IPR035979 GO:0003676
Eupl01g00102 494 Coils Coil 24 45 - -
Eupl01g00102 494 MobiDBLite consensus disorder prediction 27 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00102 Eupl-Chr1 3359207 3373882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00102 221 321 C2H2 Transcription Factor Family AT2G19380 30.693 3.72e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00102 K12741 - nnu:104593504 610.142