LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Eupl01g00100	ATGAGTAGTAGAAAGGAAGAAGAGCGAAATGAAAAGATCATTCGAGGTCTAATGAAGCTTCCTCCGAATCGGAGATGCATCAATTGCAACAGCCTGGGTCCTCAGTATGTCTGCACAAATTTCTGGACATTTATCTGTACAACTTGCAGCGGGATTCATCGCGAGTTTACTCACCGTGTAAAGTCTGTATCCATGGCAAAATTCACTTCTCAAGAAGTTGAAGCTCTTCAGAGAGGTGGTAATCAGCGGGCAAGGGAAATGTTTCTGAAAGATTGGGACCTGCAACGGCAGAGATTGCCTGAGAGCAGCAATGTTGATAGAGTCCGTCAGTTTATAAAGAATGTCTATGTGGATAAGAGATATGCTGGAGAAAAGACCTCTGACAAACCTCCAAGAGACATGCAGAGCCTGAAAAACCATGAAGATGACACCCGAAGGGCCAGTTCATATCATTCCTATTCTCAGAGTCCACCATATGAATATCAATATGAAGATCGGAAGTATGGCAGACAAGTTGGTGTGCTTACTAGAAAGCCCGGTTCAGATCGAGGCCACTATGAAGGGAAGATTTCTAGCTTTTGCAGTCCGGGTCGCTTAAGCGAGCAAATGTATGAGGATAGGTTCGCCAATGAGGGCTCTGGTTCCAGAGTTTCGGACTACTCTGTGTCTAGTCGAGGCGATCCCTTCAGATCTGATACCCAGTCCCCTAATTTTAATCAGGACATCGGATTAAGCAGTCATCCAATTCATCCTAGAACTGGATCTTTAGGCAGCTTTGGATCCTTCGATAGCAACTCCATGTCTCTGAGATCAGTTAATTCAGGTAGTTTCGCTGAAGTCATCTCAGAACCTGAACAATATTCTGGGACCCAGCAGGGCAGAATGTCTTCTGTTCCCTCCTTACCACGATCATCTGTTTCTGCTAGTGCTGCGAGCCTGGACCCTTCGAGTGCACCATTTGTACAACAATCTGCAACTTCTTCAGCTCCAACTGTAGATTTGTTTGCTGACATCAATCATCAGCACTTAGCTACAACCTCTTTGGGGCAAAAACCATCGGCAGTTTCTTACCCAGAAAATGGAGGATGGGCGACATTCGACTTACCTCAGCATGAGGCATCTTCCCTTGAAACGATAAATGTACCCCCTGTTAGTATGCCTCCTGGTGATGCAGTACCTCTGGGAAACTTTGACATACTATATTCCATAAATCCAAACATGCAGTGGCCATCGGTTCAAAACCCCCCTGCTCATGGGCCTTTTTCTTCGGTTGATAATCAACTGCACGGGGGACCGCATGAAGTTCAAGCTTCAACTGGTCCATCAAGCACCAAGCCATGGAATGCTTTTGAAGATTCTATTGGAAGCCTTCCTCAAACTTCCTTTGAAAATATGCTACATAAGAGTGAACAAGTTCCAGCATATAGGCCTCCTTCAACTGGTGATCAGTATTTGAGCTCTAAAGTTTCAGAGGACTCCAGCAAAGATGGGTTTCAAATAGCTAACTTAGAGGATAGACCAACTGTTCCTAGTTCACCATTTCAAGGTGTCATTGCTGGATCATCATTTACTCCCTCAGTGCTTCCTTTGATGGGAGGAGTGCCATCGCATGCTACTGATCAGAAATCTACAAATCCATTTGATCTTCCGTATGAATCTGATTTGGAACCTAGCAGTATGTTCTTAGGCATGAGCTCTTTGCAAGCAGCACTGCCAGATCCCCAGTTGCCACCTGCTTTCATCGGTGACATAACTCAACCATGGTTTCCTCAGAATTCAGTTACACCCTATATTCCAGCCGTGCCACAAGGAATATCCCTTCACAAGGCCCTGTTGCGTCACTTGGTGGGAATCCGTTTGCGTAAGAGTTGGCAGGCAGAAACATACACATCTTCCTCCCTTGGTGGTAAAAGCCGACTGTTGCTGACTCTTCTATTATCTGATGTTCAATGGGTATGGGGATCATGGTGGGGGAAGGTGGCGTTTATAGCTTTTTTTGGTTTTACCAGAAAAATAAGAACACACTGGAAATAG	2034	0.4518	MSSRKEEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTNFWTFICTTCSGIHREFTHRVKSVSMAKFTSQEVEALQRGGNQRAREMFLKDWDLQRQRLPESSNVDRVRQFIKNVYVDKRYAGEKTSDKPPRDMQSLKNHEDDTRRASSYHSYSQSPPYEYQYEDRKYGRQVGVLTRKPGSDRGHYEGKISSFCSPGRLSEQMYEDRFANEGSGSRVSDYSVSSRGDPFRSDTQSPNFNQDIGLSSHPIHPRTGSLGSFGSFDSNSMSLRSVNSGSFAEVISEPEQYSGTQQGRMSSVPSLPRSSVSASAASLDPSSAPFVQQSATSSAPTVDLFADINHQHLATTSLGQKPSAVSYPENGGWATFDLPQHEASSLETINVPPVSMPPGDAVPLGNFDILYSINPNMQWPSVQNPPAHGPFSSVDNQLHGGPHEVQASTGPSSTKPWNAFEDSIGSLPQTSFENMLHKSEQVPAYRPPSTGDQYLSSKVSEDSSKDGFQIANLEDRPTVPSSPFQGVIAGSSFTPSVLPLMGGVPSHATDQKSTNPFDLPYESDLEPSSMFLGMSSLQAALPDPQLPPAFIGDITQPWFPQNSVTPYIPAVPQGISLHKALLRHLVGIRLRKSWQAETYTSSSLGGKSRLLLTLLLSDVQWVWGSWWGKVAFIAFFGFTRKIRTHWK*	678

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Eupl01g00100	677	MobiDBLite	consensus disorder prediction	432	454	-	-
	Eupl01g00100	677	MobiDBLite	consensus disorder prediction	122	148	-	-
	Eupl01g00100	677	MobiDBLite	consensus disorder prediction	284	324	-	-
	Eupl01g00100	677	MobiDBLite	consensus disorder prediction	472	493	-	-
	Eupl01g00100	677	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	11	129	IPR001164	GO:0005096
	Eupl01g00100	677	MobiDBLite	consensus disorder prediction	411	454	-	-
	Eupl01g00100	677	SUPERFAMILY	ArfGap/RecO-like zinc finger	9	123	IPR037278	-
	Eupl01g00100	677	MobiDBLite	consensus disorder prediction	209	250	-	-
	Eupl01g00100	677	SMART	arf_gap_3	11	130	IPR001164	GO:0005096
	Eupl01g00100	677	CDD	ArfGap_AGFG	11	121	-	-
	Eupl01g00100	677	FunFam	Arf-GAP domain and FG repeat-containing protein 1	1	134	-	-
	Eupl01g00100	677	PANTHER	ARFGAP/RECO-RELATED	1	604	IPR044820	GO:0005096
	Eupl01g00100	677	MobiDBLite	consensus disorder prediction	214	246	-	-
	Eupl01g00100	677	Gene3D	Arf GTPase activating protein	1	133	IPR038508	-
	Eupl01g00100	677	PRINTS	HIV Rev interacting protein signature	23	42	IPR001164	GO:0005096
	Eupl01g00100	677	PRINTS	HIV Rev interacting protein signature	60	81	IPR001164	GO:0005096
	Eupl01g00100	677	PRINTS	HIV Rev interacting protein signature	42	59	IPR001164	GO:0005096
	Eupl01g00100	677	MobiDBLite	consensus disorder prediction	122	167	-	-
	Eupl01g00100	677	Pfam	Putative GTPase activating protein for Arf	12	123	IPR001164	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Eupl01g00100	Eupl-Chr1	3284383	3293609	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Eupl01g00100	14	91	C2H2 Transcription Factor Family	AT4G05330	37.647	2.52e-10	60.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Eupl01g00100	K15044		-	msin:131227059	739.184