Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00096 ATGGCGGAGAAGAGAAAACCAATCCCCAAAGAAGAACAACTCACCTCTGAGGATGAATCTTTAGAAGAAGATGAAGAAGAAGATAATGAATCTCCATCAGAAGCAGAAACGGAACCCGTATCCGACGACGAAGAAGAAGACGAAGACGAAGACGACGACGACGAAGACGAAGACGACGAGCTTTCGAAGAGAGAGACTTTACGGAAGCTTCTAGAACCCTTTGGGAAAGACCAACTCATCGAATTTCTCAAGGAAGCGGCGCTCAAGGACCGTTCGATCATCGAACGGATCAGCCAGGCCGCCGAATCGGACACTGTCCATCGCAAGATCTTCGTCCACGGCCTCGCCTGGGACTCCACCACCGAAACCCTAACTTCCTTCTTCAAGCAGTACGGTCAGATTGAGGACTGCAATGTCGTCACCGACAAGCTCACCGGTAAATCCAAGGGCTACGGCTTCGTCCTCTTCAAGACCCGCGATGGAGCCCGCAAGTCTCTCAAGCAGCCTCAGAAGAAGATTGGAAACCGGATGATCTCGTGCCAGTTGGCATCCTTCGGCCCGGTCCCAAACCACCCGGTTCCCGACTCGACGGGGCGCAAGATTTACGTCTCCAACATCGGTGCGCATATGAACCCGAGAAGCTCCGGGCGTTCTTTGCCCAGTTTGGGGAGATAG 675 0.5319 MAEKRKPIPKEEQLTSEDESLEEDEEEDNESPSEAETEPVSDDEEEDEDEDDDDEDEDDELSKRETLRKLLEPFGKDQLIEFLKEAALKDRSIIERISQAAESDTVHRKIFVHGLAWDSTTETLTSFFKQYGQIEDCNVVTDKLTGKSKGYGFVLFKTRDGARKSLKQPQKKIGNRMISCQLASFGPVPNHPVPDSTGRKIYVSNIGAHMNPRSSGRSLPSLGR* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00096 224 Gene3D - 9 191 IPR012677 -
Eupl01g00096 224 MobiDBLite consensus disorder prediction 16 60 - -
Eupl01g00096 224 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 177 IPR000504 GO:0003723
Eupl01g00096 224 MobiDBLite consensus disorder prediction 1 15 - -
Eupl01g00096 224 SUPERFAMILY RNA-binding domain, RBD 107 211 IPR035979 GO:0003676
Eupl01g00096 224 PANTHER GEO13361P1-RELATED 97 212 - -
Eupl01g00096 224 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 208 IPR000504 GO:0003723
Eupl01g00096 224 SMART rrm1_1 109 181 IPR000504 GO:0003723
Eupl01g00096 224 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00096 Eupl-Chr1 3199390 3200064 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00096 64 187 C2H2 Transcription Factor Family AT2G19380 45.968 4.73e-35 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00096 K12741 - nnu:104593496 266.929