Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00087 ATGGGAAGGCCTCCTTGCTGTGACAAGATTGGAATCAAGAAAGGACCTTGGACACCTGAAGAAGACATCATCTTGGTTTCTTACATCCAAGAACATGGACCAGGAAACTGGAGATCAGTGCCTACAAACACTGGGTTGCTGAGGTGCAGTAAGAGTTGCAGGCTGAGATGGACTAATTACCTCAGACCGGGAATCAAGCGCGGGAATTTCACCCCTCATGAAGAAGGAATGATAATCCATCTTCAAGCTTTATTCGGTAACAAATGGGCAGCCATAGCTTCCTACCTCCCACAAAGAACAGACAATGATATAAAGAACTACTGGAACACCCATCTGAAGAAGAAGATTAAGAAGTTTCAATCAGCTTTGGGGGAGCCTAATATAGCATCAGATTCAACAACTTGTCAGCTTGTTACCAAGAGCTACAGTGAGAAAAGGAGCAGCTTCGATATTACCAACCAAGCCTCACTTCTCAGGTTAAACCAGAGCTCCACTTATGCTTCAAGCACAGAGAACATTTCAAGACTTTTAGAAGGTTGGATGAGGACTTCTCCAAAGGATACTACTCTTAGTAAAGTCCAAGAGAAACAGCAACAAAGCAACAACAACAACAACAACAACAACAACAGCAACAGCAGCAACACGAGCAACAGCAATGTTGTGGCTACAACTTCTCTCAAATGCAACCAAGCTAATAAAGTTGAACAAGATAGCTGTGATCTCATCTCACATGAAGAATTTGAGTCACTCCTGTCTTTTGAGAACATGAGCAACATAGCTTGGGAGAAAGCTTCCTCTAATTATACCCATCATGGGTCTCAAACCACCATGTTGGAAAGCAAGCCAAAATTGGAGAACCAGCCTCCATTATCTTTGGTTGAGAAATGGCTTTTGGATGAAGCAGCAGGACATGTAGAAGAAATGATGGAATTGTCTCATATATTCTGA 948 0.4251 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALFGNKWAAIASYLPQRTDNDIKNYWNTHLKKKIKKFQSALGEPNIASDSTTCQLVTKSYSEKRSSFDITNQASLLRLNQSSTYASSTENISRLLEGWMRTSPKDTTLSKVQEKQQQSNNNNNNNNNSNSSNTSNSNVVATTSLKCNQANKVEQDSCDLISHEEFESLLSFENMSNIAWEKASSNYTHHGSQTTMLESKPKLENQPPLSLVEKWLLDEAAGHVEEMMELSHIF* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00087 315 CDD SANT 69 112 IPR001005 -
Eupl01g00087 315 CDD SANT 16 61 IPR001005 -
Eupl01g00087 315 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Eupl01g00087 315 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Eupl01g00087 315 Gene3D - 13 66 - -
Eupl01g00087 315 FunFam MYB-related transcription factor 13 66 - -
Eupl01g00087 315 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Eupl01g00087 315 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Eupl01g00087 315 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 216 - -
Eupl01g00087 315 Gene3D - 69 134 - -
Eupl01g00087 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Eupl01g00087 315 MobiDBLite consensus disorder prediction 186 219 - -
Eupl01g00087 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Eupl01g00087 315 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Eupl01g00087 315 SMART sant 66 114 IPR001005 -
Eupl01g00087 315 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00087 Eupl-Chr1 2830104 2831928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00087 1 136 MYB Transcription Factor Family AT5G62470 80.435 1.88e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Eupl01g00087 Myb_DNA-binding 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00087 K09422 - nnu:104589500 448.358