Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00077 ATGGGTGAAGCTATGGTTGCTAGGTACTGGTGTCATATGTGCTCTCAAATGGTAAACCCAGTTATGGAAATGGAGATCAAATGCCCATTTTGCGAAAGCGGGTTTGTCGAAGAAATGGATAGCAGAAGAGACCATGACACTGATCTGGGATCCGATCGAGCACTTTCTCTTTGGGCTCAGATCTTGCTTGGAATGATGGGTAGTAATCCTCGCCGCAGAAGATTTGGAAGAGAGGAAGAGGAAGAAGAAGAAGAAGAAGAAGCACGGCGAGGAGAATTGGAGCAAGACCGAGACGTTGGATTGATCCCCCGAAGAAGAAGAAGCTCGACGGCCATCCTTCACTTGCTCGAAGGCCTTCGAGCTGGGATTGCATCCGATTCAGAGAATTCTGAAAGCGAGAGGGAAAGAGAGCGAGAGCGAGAGCGTGTAATCCTAATCAATCCTGTCAACCAGACCATAATTGTTCAAGGGTCCTTCGATGTGAACCAGACCCAAGACCAGAATCAGAGTGTTCCAGGCTCTTTCGGCGATTACCTCATTGGGCCTGGTTTGGATCTGCTGCTTCAGCATTTGTCGGAGAATGATCCGAACAGATATGGGACCCCGCCGGCACAGAAAGAGGCAGTTGAAGCAATGCCCACTGTGAAGATTGGGGAGAACCTGCAGTGTTCGGTATGCTTGGAGGATTTCGAGATCGGTGTGGAAGCAAAGGAGATGCCATGTAAGCATAAATTCCATAGTGGGTGCATTCTGCCATGGCTGGAGCTTCATAGTTCTTGCCCAGTTTGCAGGTTTCAGATGCCTGCAGTCGATGGATCAAAGGTTGATGCAGATGAGGCTGGGAATAGCAGTAATATGGTAGCGAGTAGTGAGGTTGGTGATGGTGGAGAGAGAGGTGGAGAGGGGGGAAATGGAAATGGGAGAAGGTTTAGGGTCCCAATGTCATGGCCCTTTCATGGGTTGTTTTCTTTATCAGGATCACAGAGTGGTGGCAATTCTTCCTCTCCACCATCGTCGTCAACAGCACCGAGAAGAAGTAATTATCGTACAGATGAGAATTGA 1062 0.4887 MGEAMVARYWCHMCSQMVNPVMEMEIKCPFCESGFVEEMDSRRDHDTDLGSDRALSLWAQILLGMMGSNPRRRRFGREEEEEEEEEEARRGELEQDRDVGLIPRRRRSSTAILHLLEGLRAGIASDSENSESERERERERERVILINPVNQTIIVQGSFDVNQTQDQNQSVPGSFGDYLIGPGLDLLLQHLSENDPNRYGTPPAQKEAVEAMPTVKIGENLQCSVCLEDFEIGVEAKEMPCKHKFHSGCILPWLELHSSCPVCRFQMPAVDGSKVDADEAGNSSNMVASSEVGDGGERGGEGGNGNGRRFRVPMSWPFHGLFSLSGSQSGGNSSSPPSSSTAPRRSNYRTDEN* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00077 353 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 122 268 - -
Eupl01g00077 353 Pfam zinc-ribbon 8 39 IPR039525 GO:0061630
Eupl01g00077 353 MobiDBLite consensus disorder prediction 321 346 - -
Eupl01g00077 353 Coils Coil 76 96 - -
Eupl01g00077 353 MobiDBLite consensus disorder prediction 71 95 - -
Eupl01g00077 353 MobiDBLite consensus disorder prediction 276 353 - -
Eupl01g00077 353 SMART ring_2 223 263 IPR001841 -
Eupl01g00077 353 SUPERFAMILY RING/U-box 211 269 - -
Eupl01g00077 353 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
Eupl01g00077 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 270 IPR013083 -
Eupl01g00077 353 FunFam E3 ubiquitin-protein ligase RING1-like 190 270 - -
Eupl01g00077 353 Pfam Ring finger domain 222 264 IPR001841 -
Eupl01g00077 353 CDD RING-H2_RNF126-like 222 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00077 Eupl-Chr1 2600858 2603163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00077 113 311 C3H Transcription Factor Family AT1G26800 36.000 2.17e-28 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00077 - - ming:122062109 420.624