Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00050 ATGGAAGAGGTTTCAGAGCTGACTAAAGGAGATGATTGTATAGATTTGCCTCCTGGTTTTAGATTTCATCCAACAGATGAAGAGATCATATCTTATTATCTTTTGGAGAAGGTTTTGAATAGCAGCTTCAGTGCAAGAGCTGTTGGAGAAGTAGATTTGAATAAGTGTGAGCCATGGGATCTACCAAAGAAGGCAAAGATGGGGGAGAAAGAGTGGTATTTCTTCTGTCAGAGAGACAGGAAGTACCCAACTGGCATGAGAACAAATAGAGCAACTGAATCTGGGTATTGGAAGGCTACTGGAAAGGATAAAGAGATTTACAAGGGGAAGGGTTGTCTTGTTGGGATGAAGAAGACTCTTGTTTTCTATAGAGGGAGGGCTCCCAAAGGAGAGAAAACCAACTGGGTCATGCATGAATACAGACTGGAAGGCAAATTTTCTTACTACAACCTCCCCAAAACTGCAAAGGATGCATGGGTTGTTTGTAGGATATTTCATAAGAGCTCAGGGGTAAAGAAAAGTCCAATCTCAGGACTGCGGAAAATGAATTCTTTTGGGGATGAACTATTGGATTCTCCTTCATTGCCACCCTTGTTGGATGCTCCTTATTTCGATACGAACAGACCCGATTCGAGTTTTATCGACGGAGAAGAAGAATTCAAGGGGACAACATCAGATGGAAGTCACCTCTCTTATTTTTCCACTGGCATGGATGATCATCATCATCATCATCATCATCAACCTGAACGCAATAGCTTTCTTCTACCCAACAACTACACCAACATCAACATCAACCACCAAGGGAATTCATCTAACACACCTTCAAACTCCATTTACTACCCTCAAATTCATCTCCCAAATCCTCTCTTCCCCTTACAAGGATCTATGACTTCAGATTACCTGCACCAGGAAAGGATTAATTCAGTTCCAACCTTTCCAAGCTCAGGCTTCAGTGATTCTGATCAGGATACCGGGCTGAGCACAGATATGAACACAGAGATTTCATCAGTGGTTTCGAAGCATGACATGGGAAGCAATAGGTCTTATGAAGATCTTGAGGGGCCTTCTTCAGCTGGTCCAATTGTAGATTTAGAAAGTTTGTGGAACTACTGA 1113 0.4223 MEEVSELTKGDDCIDLPPGFRFHPTDEEIISYYLLEKVLNSSFSARAVGEVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATGKDKEIYKGKGCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLEGKFSYYNLPKTAKDAWVVCRIFHKSSGVKKSPISGLRKMNSFGDELLDSPSLPPLLDAPYFDTNRPDSSFIDGEEEFKGTTSDGSHLSYFSTGMDDHHHHHHHQPERNSFLLPNNYTNININHQGNSSNTPSNSIYYPQIHLPNPLFPLQGSMTSDYLHQERINSVPTFPSSGFSDSDQDTGLSTDMNTEISSVVSKHDMGSNRSYEDLEGPSSAGPIVDLESLWNY* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00050 370 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 260 - -
Eupl01g00050 370 FunFam NAC domain-containing protein 100-like 25 171 - -
Eupl01g00050 370 SUPERFAMILY NAC domain 13 167 IPR036093 GO:0003677|GO:0006355
Eupl01g00050 370 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Eupl01g00050 370 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Eupl01g00050 370 Gene3D NAC domain 25 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00050 Eupl-Chr1 1653890 1655358 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00050 10 210 NAC Transcription Factor Family AT5G18270 72.857 3.85e-111 326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl01g00050 NAM 8.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00050 - - msin:131227616 514.998