Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Eupl01g00047 ATGTCGAATCCTGAATCGTCACTTCCGCCGGGCTTCCGATTCCACCCAACAGATGAAGAACTTATCCTAGATTACCTAAGAAACAAGGCGAACGCGGCCTCGACCCGATATCCATTGTCCATCATCGCTGAAGTCGATATATACAAATTCGATCCATGGGAATTGCCAGCTAAAGCAGTGTTTGGTGAGAAAGAGTGGTACTTTTTTACTCCTAGAGATCGTAAGTACCCGAACGGTGCAAGGCCGAACCGAGCAGCATCGTCGGGATACTGGAAAGCTACTGGAACTGATAAGCCGATAATGGAATCGAAAGGAGGGAAGAAGAACATAGGTGTGAAGAAGGCTCTTGTGTTCTACAAGGGTAGACCTCCAAAGGGCATAAAGACTAATTGGATCATGCATGAATTTCGCCTTGCAGAAACTCCCAACAACAAGCCCTTGAAACTCAAAGACTCATCCATGAGGTTGGATGATTGGGTACTCTGTCGAATCTACAAGAAATCCAACAGTCTTCCTACAATTTCTACAACAGCTCAAGAACAAGAAGACAATTTGATGCAAGACACCCCCCTACCAGCCTTATCAAACCACCCCAATCAAAACACCCTCAAACCCCAGAAATCGACTTCCTTCTCCGATTTATTCGACGCCTTGGACTACTCGAATCTGACTCGTTTTCTATCGGACAACCCGTCCGACGCCTTTAGCTTCGAACCCTGTGCTCCCATTCTCAATTATGGCAATCCAGATCAATCCATGTTCAATAATTATTGTACCAAGCATAACAACAACAATAATAACAGCTACTTTCTTCAAAGGCTCCCTCAAATGGATTCTTCTGTTTTCGCCATGGAAAACCAGCTCAAGCGACCGCATTCAATGGGAATAAACACAGAAGAAAGTATGTTACACCCATCAAAGAAACTCATCAACTCTTGCAGCTTCATCAACAACAGTACTACTAATCAATTGGACACCCCTCAGTACCACTTACTCAACCAGCAGTTGATTTTGAGTTCCCACCTCCAATTCTGA 1035 0.4444 MSNPESSLPPGFRFHPTDEELILDYLRNKANAASTRYPLSIIAEVDIYKFDPWELPAKAVFGEKEWYFFTPRDRKYPNGARPNRAASSGYWKATGTDKPIMESKGGKKNIGVKKALVFYKGRPPKGIKTNWIMHEFRLAETPNNKPLKLKDSSMRLDDWVLCRIYKKSNSLPTISTTAQEQEDNLMQDTPLPALSNHPNQNTLKPQKSTSFSDLFDALDYSNLTRFLSDNPSDAFSFEPCAPILNYGNPDQSMFNNYCTKHNNNNNNSYFLQRLPQMDSSVFAMENQLKRPHSMGINTEESMLHPSKKLINSCSFINNSTTNQLDTPQYHLLNQQLILSSHLQF* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Eupl01g00047 344 FunFam NAC transcription factor 56 17 172 - -
Eupl01g00047 344 ProSiteProfiles NAC domain profile. 8 167 IPR003441 GO:0003677|GO:0006355
Eupl01g00047 344 Pfam No apical meristem (NAM) protein 9 138 IPR003441 GO:0003677|GO:0006355
Eupl01g00047 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 260 - -
Eupl01g00047 344 SUPERFAMILY NAC domain 4 167 IPR036093 GO:0003677|GO:0006355
Eupl01g00047 344 Gene3D NAC domain 17 171 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Eupl01g00047 Eupl-Chr1 1565793 1567771 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Eupl01g00047 3 344 NAC Transcription Factor Family AT3G04070 50.000 5.88e-103 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Eupl01g00047 NAM 2.3e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Eupl01g00047 - - pvy:116120695 413.305