LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Enph4g0396	ATGGCTTCTCATTCTCACTTATCCACCTCTATCCATTTCTTCAAGATCATCTTGAAAACCAATCTTGAAGCCATTACTATTCCAAACAAATTTACAGGCAGATATGGAAATGGTTTGCCAAACCCAGTGTTTCTGAAGCCTCCTGATGGTAAAGAATGGAAAGTGTGTTGGACAAAACGTGATAATCAGCTTTGGTTTCGAGAGGGGTGGAAGGAATTTGTTAGCTTTTACTCTCTGAATGAAGGGTATTTGGTTATGTTCAAATATGAAGGAACTTCTCAGTTTGATGTACACATATTTGACAAGAGTGCCTTAGAGATAGACTATCCTTTGTCTAAGGATACCTCTAGTCAAAAGGACAACTTTGATAATCTCAGTGATGATACAATTGAAATCATGGATGAGATGCCTCCAAACCGAAAGACTAGGCTTGAAACACCATTTTCGTCTTCAAGACATCATAAGAAAATGGGAAGTGCCACATTTGGAGATGTTGAGAAGAGAAACTCCAATCTGCAGAATTTGCATGCTGGTTTGAAAACTCAAGGCGAGCAATTTCAGGGGACAGAGTATCAGAAATCAACCAATGCTGAATTGAGATTTTCTGAGCAGGAATCTGAAGAAGACATAGGAGCAAGAACTTTTACCAAGAGTAGATGCCTGAATTCTGAGCACAGAAGGAAGAGAGCATTAACTAATTTGGAAAAGATCAGAGCTTTTGAGAGTGCCAGTTTGTTCAAATCTGAAAATCCCTTTTTCATGGTAGTCATGAAATCTGCATACGTCAGCCGTAAATTTTACTTGGTAATGCCAACAAAATTCTCTAAAAAATATTTGAAGAATGAGTGTGTTTTGGAACTTCATACCTTGGATGGGAGAACTTGGTCCACGACGTATAAGATTCCCAGAATCACATATGGCTGGGAGAAATTTGTTATGGATAATAGTTTGAGAGTGGGCCAGGTTTGTGTTTTTGAAATGATTGGTCAATCATTCAGAGTACATATTTTTGGAGATGAAGAAGAAGAGGGAAATCTGAGAGTCAATCCTTTAAAGAATGAGCAGATGAGCAGTATGCAACATTCTTCTCTTGAAAATGCTATCTCTTTCAAATCTAAAAATCCCCATTTTATCTTGAAGATGACATACTTTTACATTTTTGGCACATCAAACTTGCATGTGCCGATAACATTCGCAGAAACACATCTTGTTAACCGAACTACAAGTGTCAATCTTATCGTACAAGATGTAGCTTGGCCTGTTGCATATGAATTCAGAACAACTTCTCAAGGAAATCAAATTCATGAATTTTCTCTAGGATGGAAGCGATTTTGCAGGGATAATAACTTGGAAGTAGATGATGTTTGTGTCTTTGAGCTCATTATGAAAATCAAATTCGCATTTCGAGTGACAATTGTTCGAGCCGCTGAACACCCAGTTCATTCAACCCACTGA	1455	0.3787	MASHSHLSTSIHFFKIILKTNLEAITIPNKFTGRYGNGLPNPVFLKPPDGKEWKVCWTKRDNQLWFREGWKEFVSFYSLNEGYLVMFKYEGTSQFDVHIFDKSALEIDYPLSKDTSSQKDNFDNLSDDTIEIMDEMPPNRKTRLETPFSSSRHHKKMGSATFGDVEKRNSNLQNLHAGLKTQGEQFQGTEYQKSTNAELRFSEQESEEDIGARTFTKSRCLNSEHRRKRALTNLEKIRAFESASLFKSENPFFMVVMKSAYVSRKFYLVMPTKFSKKYLKNECVLELHTLDGRTWSTTYKIPRITYGWEKFVMDNSLRVGQVCVFEMIGQSFRVHIFGDEEEEGNLRVNPLKNEQMSSMQHSSLENAISFKSKNPHFILKMTYFYIFGTSNLHVPITFAETHLVNRTTSVNLIVQDVAWPVAYEFRTTSQGNQIHEFSLGWKRFCRDNNLEVDDVCVFELIMKIKFAFRVTIVRAAEHPVHSTH	484

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Enph4g0396	484	CDD	B3_DNA	375	474	IPR003340	GO:0003677
	Enph4g0396	484	ProSiteProfiles	B3 DNA-binding domain profile.	10	103	IPR003340	GO:0003677
	Enph4g0396	484	ProSiteProfiles	B3 DNA-binding domain profile.	377	476	IPR003340	GO:0003677
	Enph4g0396	484	SMART	B3_2	383	476	IPR003340	GO:0003677
	Enph4g0396	484	SMART	B3_2	253	340	IPR003340	GO:0003677
	Enph4g0396	484	SMART	B3_2	13	103	IPR003340	GO:0003677
	Enph4g0396	484	SUPERFAMILY	DNA-binding pseudobarrel domain	10	103	IPR015300	-
	Enph4g0396	484	CDD	B3_DNA	251	337	IPR003340	GO:0003677
	Enph4g0396	484	ProSiteProfiles	B3 DNA-binding domain profile.	253	340	IPR003340	GO:0003677
	Enph4g0396	484	Pfam	B3 DNA binding domain	253	337	IPR003340	GO:0003677
	Enph4g0396	484	Pfam	B3 DNA binding domain	21	102	IPR003340	GO:0003677
	Enph4g0396	484	Pfam	B3 DNA binding domain	380	475	IPR003340	GO:0003677
	Enph4g0396	484	SUPERFAMILY	DNA-binding pseudobarrel domain	372	477	IPR015300	-
	Enph4g0396	484	CDD	B3_DNA	12	101	IPR003340	GO:0003677
	Enph4g0396	484	PANTHER	B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED	355	477	IPR044837	-
	Enph4g0396	484	Gene3D	-	356	478	IPR015300	-
	Enph4g0396	484	Gene3D	-	230	341	IPR015300	-
	Enph4g0396	484	Gene3D	-	6	104	IPR015300	-
	Enph4g0396	484	SUPERFAMILY	DNA-binding pseudobarrel domain	248	337	IPR015300	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Enph4g0396	Enph-Chr4	15557333	15562703	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Enph4g0396	360	474	B3 DNA Binding Superfamily	AT3G18990	28.696	2.03e-10	60.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Enph4g0396		B3	7.9e-13	CL0405