Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Enph1g0528 | ATGCTTGAATCTAGGTTCGAAATTGATAAGCCAATGACGACGACCTATCACCAACCCTCCTCGATTGAGGAAGTTCGAACTCTTTGGATTGGGGATTTGCAGTACTGGGTCGACGAAACATACCTCAGTCACTGCTTCGTTCACACCGGCGAGGTAGTTTCCATAAAGATCATTCGTAACAAGATAACTGGACAGCCCGAGGGCTATGGATTTGTCGAGTTTGTTTCCCATGCAGCAGCAGAACGGATCCTGCAAACTTATAATGGGACACAAATGCCTGGAACAGAACAGACTTTCAGGCTTAATTGGGCATCTTTTGGTATTGGGGAGCGGCGTCCTGATGCTGGGCCTGAGCACTCAATTTTTGTGGGGGATCTAGCACCTGATGTTACAGATTACCTTCTGCAGGAGACATTCCGTGCCCATTATCCTTCAGTTAGAGGCGCTAAAGTTGTGACTGATCCTAATACTGGGCGTTCCAAGGGATATGGGTTTGTTAAATTTTCTGATGAGACTGAAAGGAATCGTGCTATGACTGAAATGAATGGTGCCAATGCGTATAATAGTGCTGCAACGCCAAAGAAGACCACTGGTTTCCAGCAGCAATATGCTGCAACTAAAGCATCTGCTGAAGATGCCATTCAGAGGATGCAGGGAAAGATCATAGGTCAGCAAGTGGTTCGAATTTCTTGGGGTAGGAGCCTAACAGCTAGACAGGTTGAAGGTGCTCAAGACATGGCATCTATGGCCATGCCTAATATCGAACAAAGGGAGGAGCTATACGATCCCCTGACAATGCCTGATGTAGATAAAGGGAATCAAAAGCTAATAAAATTAGATGGGTCGAGGCCAATGACGACGACCTATCACCAACCCTCCTCGATTGAGGAAGTTCGAACTCTTTGGATTGGGGATTTGCAGTACTGGGTCGACGAAACATACCTCAGTCACTGCTTCGTTCACACCGGCGAGGTAGTTTCCATAAAGATCATTCGTAACAAGATAACTGGACAGCCCGAGGGCTATGGATTTGTCGAGTTTGTTTCCCATGCAGCAGCAGAACGGATCCTGCAAACTTATAATGGGACACAAATGCCTGGAACAGAACAGACTTTCAGGCTTAATTGGGCATCTTTTGCACCTGATGTTACAGATTACCTTCTGCAGGAGACATTCCGTGCCCATTATCCTTCAGTTAGAGGCGCTAAAGTTGTGACTGATCCTAATACTGGGCGTTCCAAGGGATATGGGTTTGTTAAATTTTCTGATGAGACTGAAAGGAATCGTGCTATGACTGAAATGAATGGTGTTTATTGCTCGAGTAGGCCAATGCGTATAAGTGCTGCAACGCCAAAGAAGACCACTGGTTTCCAGCAGCAATATGCTGCAACTAAAGCCGTATATCCCATCCCAGCATATACCACTCCAATAAATGCAGTTCCACCTGATTATGATATGAATAATACAACTAGGATGCAGGGAAAGATCATAGGTCAGCAAGTGGTTCGAATTTCTTGGGGTAGGAGCCTAACAGCTAGACAGGTTGAAGGTGCTCAAGACATGGCATCTATGGCCATGCCTAATATCGAACAAAGGGAGGAGCTATACGATCCCCTGACAATGCCTGATGTAGATAAGCTGAATGCTGCATATCTATCAGTACATGGAAGTGCCATTTTAGGGCGGTCCCTCTGGCAGAAAACCTCACCCTTCATTCAAGCTTAG | 1725 | 0.4591 | MLESRFEIDKPMTTTYHQPSSIEEVRTLWIGDLQYWVDETYLSHCFVHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDETERNRAMTEMNGANAYNSAATPKKTTGFQQQYAATKASAEDAIQRMQGKIIGQQVVRISWGRSLTARQVEGAQDMASMAMPNIEQREELYDPLTMPDVDKGNQKLIKLDGSRPMTTTYHQPSSIEEVRTLWIGDLQYWVDETYLSHCFVHTGEVVSIKIIRNKITGQPEGYGFVEFVSHAAAERILQTYNGTQMPGTEQTFRLNWASFAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDETERNRAMTEMNGVYCSSRPMRISAATPKKTTGFQQQYAATKAVYPIPAYTTPINAVPPDYDMNNTTRMQGKIIGQQVVRISWGRSLTARQVEGAQDMASMAMPNIEQREELYDPLTMPDVDKLNAAYLSVHGSAILGRSLWQKTSPFIQA | 574 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Enph1g0528 | 574 | CDD | RRM1_SECp43_like | 27 | 107 | - | - | |
| Enph1g0528 | 574 | FunFam | Polyadenylate-binding protein RBP47B | 25 | 105 | - | - | |
| Enph1g0528 | 574 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 121 | 187 | IPR000504 | GO:0003723 | |
| Enph1g0528 | 574 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 379 | 443 | IPR000504 | GO:0003723 | |
| Enph1g0528 | 574 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 28 | 96 | IPR000504 | GO:0003723 | |
| Enph1g0528 | 574 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 301 | 369 | IPR000504 | GO:0003723 | |
| Enph1g0528 | 574 | CDD | RRM2_SECp43_like | 118 | 183 | - | - | |
| Enph1g0528 | 574 | CDD | RRM1_SECp43_like | 300 | 380 | - | - | |
| Enph1g0528 | 574 | Gene3D | - | 378 | 448 | IPR012677 | - | |
| Enph1g0528 | 574 | Gene3D | - | 118 | 191 | IPR012677 | - | |
| Enph1g0528 | 574 | FunFam | Polyadenylate-binding protein RBP47B | 298 | 377 | - | - | |
| Enph1g0528 | 574 | CDD | RRM2_SECp43_like | 380 | 450 | - | - | |
| Enph1g0528 | 574 | Gene3D | - | 25 | 105 | IPR012677 | - | |
| Enph1g0528 | 574 | Gene3D | - | 298 | 377 | IPR012677 | - | |
| Enph1g0528 | 574 | FunFam | Polyadenylate-binding protein RBP47B | 107 | 204 | - | - | |
| Enph1g0528 | 574 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 372 | 451 | IPR000504 | GO:0003723 | |
| Enph1g0528 | 574 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 26 | 106 | IPR000504 | GO:0003723 | |
| Enph1g0528 | 574 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 299 | 379 | IPR000504 | GO:0003723 | |
| Enph1g0528 | 574 | SMART | rrm1_1 | 300 | 375 | IPR000504 | GO:0003723 | |
| Enph1g0528 | 574 | SMART | rrm1_1 | 377 | 447 | IPR000504 | GO:0003723 | |
| Enph1g0528 | 574 | SMART | rrm1_1 | 120 | 194 | IPR000504 | GO:0003723 | |
| Enph1g0528 | 574 | SMART | rrm1_1 | 27 | 102 | IPR000504 | GO:0003723 | |
| Enph1g0528 | 574 | SUPERFAMILY | RNA-binding domain, RBD | 298 | 453 | IPR035979 | GO:0003676 | |
| Enph1g0528 | 574 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 19 | 237 | - | - | |
| Enph1g0528 | 574 | FunFam | Polyadenylate-binding protein RBP47B | 378 | 462 | - | - | |
| Enph1g0528 | 574 | SUPERFAMILY | RNA-binding domain, RBD | 25 | 184 | IPR035979 | GO:0003676 | |
| Enph1g0528 | 574 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 119 | 183 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Enph1g0528 | Enph-Chr1 | 30271381 | 30300549 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Enph1g0528 | 300 | 509 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 24.229 | 3.74e-12 | 67.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Enph1g0528 | - | - | tpra:123894020 | 434.106 |