Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Enph12g0453 ATGGCCCAGGTTCAAGTTCAGCCTCAGAATGTGGTGCCGGGAACTAACGGTGCTCCTACAACTGGTGGAGCAAACCAGTTCGTGACGACGTCGCTCTATGTTGGAGATCTTGATGTGAACGTTACAGAATCACAGCTCTACGATCTCTTTAACCAAGCTGGTCAGGTTGTCTCCGTTAGGGTTTGTAGGGATTTGACCAGCCGGCGGTCACTCGGTTACGGGTATGTCAATTTTGGCACTGCGCCAGAAGCTGCTAGAGCGATGGATTTGATGAATTTCACCATTCTTAATAACAAGCCAATCCGTATTATGTATTCACATCGTGATCCTAGTATTCGAAGAAGTGGGGCTGGAAATATATTTATTAAGAATCTGGATAAGGCAATTGATCACAAAGCTTTGCATGATACCTTTTCTGCATTTGGAAATATTCTATCTTGTAAAGTAGCTACAGATTCATCTAGCCAGTCAAAGGGCTATGGTTTTGTGCAATTTGATAATGAGGAATCTGGTCAAAAGGCCATAGAGAAGTTGAATGGTATGCTGTTGAATGATAAACAAGTGTATGTGGGACCCTTTCTTCGTAAGCAAGAGAGAGAAAGTTCTGTTGACAAAACAAGATTTAACAATGTTTTTGTAAAGAATTTATCTGAGTCAACCACTGATGATGATTTAAAAAGAATTTTTGGTGAATTTGGAACAATTACAAGTGCTATTGTGATGAGAGATGTGGATGGAAAATCTAAGTGCTTTGGATTTGTGAACTTTGAGAATGCTGATGATGCTGCTAGGGCTGTTGATTTGCTTAACGGAAAGAAAATTGACGAGAAGGAATGGTATGTTGGAAAAGCTCAAAAGAAATCTGAAAGGGAACTTGAATTAAAACTTCGATTTGAGCAGAGCATGAGAGAAGCTGCAGATAAATATCAAGGGGCTAACTTATATGTTAAAAATTTGGATGATAGCATTAGTGACGAAAAACTTAGAGAGCTCTTCTCTCCATTTGGTAACATCACCTCCTGCAAGGTTATGAGGGACCCCAATGGAATAAGCCGAGGATCAGGTTTTGTTGCATTCTCAACTCCTGAAGAGGCTTCTAGAGCTCTTTTGGAGATGAATGGAAAAATGATTGTAAGCAAGCCTCTTTATGTTGCTCTAGCCCAACGGAGAGAAGATAGAAGAGCTAGACTGCAGGCTCAATTTGCTCAAATGCGGCCTGTTGCAATGGCACAGTCTGTAGCTCCTCGGGTTTCAATGTACCCTCCTGGTGGTCCGGGTATTGGACAACAAATATTTTATGGTCAAGGTCCTCCTGCTATTATTCCTTCTCAGCCTGGATTTGGATATCAACAACAACTTGTACCTGGAATGAGGCCTGGAGGAGGTCCTATGCCAAATTTCTTTGTACCAATGGTTCAGCAAGGGCAGCAGGGCCAGCGTCCAGGTGGAAGACGTGCAGGGCCAGTTCAGCAGAGCCAGCAGCCAGTTCCACTAATCCAACAACAGGCAAGTATGCTTCCGAGGGGTAGAGTTTATCGATATCCTCCTCCTAGTAGGGGTCTACCTGATGTTCCCATGCCAGGGGTTGCTGGAGGCATGTTCTCTGTTCCATATGATGTTGGTGGAATGCCAATACGTGAAGCAGCACTGCCCCAGCAAATTCCTATTGGGGCTTTGGCTTCTGCCCTGGCTAATGCCACTACAGAGCAACAAAGGACGATGTTGGGTGAGAATCTTTACCCTCTCGTGGAACAATTGGAGCCTGATAATGCAGCTAAAGTGACAGGCATGCTTTTGGAGATGGATCAACCTGAGGTTCTGCACTTGCTTGAATCACCAGAAGCTCTGAAATCAAAGGTGGCTGAAGCAATGGATGTTCTGAGGAATGTTGCTCAGCAGCAACAAGCTGGTGGAGCAGTGGATCAATTGGCCTCGTTGTCACTTAATGACAATCTTGTTTCTTAA 1965 0.4392 MAQVQVQPQNVVPGTNGAPTTGGANQFVTTSLYVGDLDVNVTESQLYDLFNQAGQVVSVRVCRDLTSRRSLGYGYVNFGTAPEAARAMDLMNFTILNNKPIRIMYSHRDPSIRRSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSSQSKGYGFVQFDNEESGQKAIEKLNGMLLNDKQVYVGPFLRKQERESSVDKTRFNNVFVKNLSESTTDDDLKRIFGEFGTITSAIVMRDVDGKSKCFGFVNFENADDAARAVDLLNGKKIDEKEWYVGKAQKKSERELELKLRFEQSMREAADKYQGANLYVKNLDDSISDEKLRELFSPFGNITSCKVMRDPNGISRGSGFVAFSTPEEASRALLEMNGKMIVSKPLYVALAQRREDRRARLQAQFAQMRPVAMAQSVAPRVSMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGGPMPNFFVPMVQQGQQGQRPGGRRAGPVQQSQQPVPLIQQQASMLPRGRVYRYPPPSRGLPDVPMPGVAGGMFSVPYDVGGMPIREAALPQQIPIGALASALANATTEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQPEVLHLLESPEALKSKVAEAMDVLRNVAQQQQAGGAVDQLASLSLNDNLVS 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Enph12g0453 654 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676
Enph12g0453 654 SMART rrm2_1 31 104 IPR003954 GO:0003676
Enph12g0453 654 SMART rrm2_1 313 385 IPR003954 GO:0003676
Enph12g0453 654 SMART rrm2_1 210 282 IPR003954 GO:0003676
Enph12g0453 654 SMART rrm2_1 119 191 IPR003954 GO:0003676
Enph12g0453 654 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 31 628 IPR006515 GO:0003723
Enph12g0453 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Enph12g0453 654 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 555 632 IPR002004 GO:0003723
Enph12g0453 654 Gene3D - 1 118 IPR012677 -
Enph12g0453 654 Gene3D - 194 295 IPR012677 -
Enph12g0453 654 SUPERFAMILY RNA-binding domain, RBD 209 393 IPR035979 GO:0003676
Enph12g0453 654 SMART rrm1_1 210 282 IPR000504 GO:0003723
Enph12g0453 654 SMART rrm1_1 31 104 IPR000504 GO:0003723
Enph12g0453 654 SMART rrm1_1 119 191 IPR000504 GO:0003723
Enph12g0453 654 SMART rrm1_1 313 385 IPR000504 GO:0003723
Enph12g0453 654 FunFam Polyadenylate-binding protein 17 118 - -
Enph12g0453 654 MobiDBLite consensus disorder prediction 474 495 - -
Enph12g0453 654 CDD RRM4_I_PABPs 311 389 - -
Enph12g0453 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Enph12g0453 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Enph12g0453 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Enph12g0453 654 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Enph12g0453 654 CDD RRM2_I_PABPs 116 192 IPR045305 -
Enph12g0453 654 PANTHER RNA BINDING PROTEIN 29 92 - -
Enph12g0453 654 MobiDBLite consensus disorder prediction 1 22 - -
Enph12g0453 654 SUPERFAMILY PABC (PABP) domain 497 648 IPR036053 GO:0003723
Enph12g0453 654 FunFam Polyadenylate-binding protein 295 400 - -
Enph12g0453 654 FunFam Polyadenylate-binding protein 199 294 - -
Enph12g0453 654 Gene3D - 296 397 IPR012677 -
Enph12g0453 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723
Enph12g0453 654 SMART poly_2 567 630 IPR002004 GO:0003723
Enph12g0453 654 Gene3D - 119 191 IPR012677 -
Enph12g0453 654 FunFam Polyadenylate-binding protein 119 192 - -
Enph12g0453 654 Gene3D - 550 634 - -
Enph12g0453 654 CDD RRM3_I_PABPs 208 287 - -
Enph12g0453 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Enph12g0453 654 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Enph12g0453 654 Pfam Poly-adenylate binding protein, unique domain 563 627 IPR002004 GO:0003723
Enph12g0453 654 FunFam Polyadenylate-binding protein 551 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Enph12g0453 Enph-Chr12 11176200 11182519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Enph12g0453 1 649 Eukaryotic Initiation Factors Gene Family AT4G34110 69.817 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Enph12g0453 K13126 - gmx:100780329 1058.13